View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_15 (Length: 252)
Name: NF10878_low_15
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 52920604 - 52920371
Alignment:
| Q |
16 |
aaataaagtagcaaaccttaatctgttatcactattggagtgcaccttcgagtgaagaaagtatactaaatatcggagagattttaaattattttgacat |
115 |
Q |
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| T |
52920604 |
aaataaagtagccaaccttaatctgttatcactattggagtgcaccttcgagtgaagaaagtatactaaatatcagagagattttaaattattttgacat |
52920505 |
T |
|
| Q |
116 |
ggaactaattagctgcttgaaaagaataattttaatgatttcacttctcaatttgttgtattgcagtcttgctgaacagctagaatc--------aatct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52920504 |
ggaactaattagctgcttgaaaagaataattttaatgatttcacttctcaatttgttgtattgcagtcttgctgaacagctagaatcaatatatgaatct |
52920405 |
T |
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| Q |
208 |
atggatgaatatggcatgtcagcacttaattcat |
241 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52920404 |
atggatgaatatggcatgtcagcacttaattcat |
52920371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 35232331 - 35232100
Alignment:
| Q |
16 |
aaataaagtagcaaaccttaatctgttatcactattggagtgcaccttcgagtgaagaaagtatactaaatatcggagagattttaaattattttgacat |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||||||| ||| |
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| T |
35232331 |
aaataaagtagccgaccttaatctgttatcactattggagtgcacctttgagtgaataaagtatactaaatatcagagagattttgaattattttggcat |
35232232 |
T |
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| Q |
116 |
ggaactaattagctgcttgaaaagaataattttaatgatttcacttctcaatttgttgtattgcagtcttgctgaacagctagaatc--------aatct |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35232231 |
ggaactaattagctgcttgaaaacaataattttaatgatttcacttatcaatttgttgtattgcagtcttgctgaacagctagaatcaatatatgaatct |
35232132 |
T |
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| Q |
208 |
atggatgaatatggcatgtcagcacttaattc |
239 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35232131 |
atggatgaatatggcatgtcagcacttaattc |
35232100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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