View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_17 (Length: 250)
Name: NF10878_low_17
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 38898829 - 38898591
Alignment:
| Q |
3 |
cattccgaatcgttttaccaatggctcgccatctatctacagatcccttcagaaactagaatctatgtcattacctaattttcttaaactacacttgact |
102 |
Q |
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| T |
38898829 |
cattccgaatcgttttaccaatggctcgccatctatctacagatcccttcagaaactagaatctatgtcattacctaattttcttaaactacacttgact |
38898730 |
T |
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| Q |
103 |
atcaaaatgttagtatattgactatcaagaagttaccaaatcgaaacggtaatctctcattaacatcagttcctcattttaaaatgcatatgtacatgtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38898729 |
atcaaaatgttagtatattgactatcaagaagttaccaaatcgaaacggtaatctctcattaacatcagttcctcattttaaaatgcatatgcacatgtt |
38898630 |
T |
|
| Q |
203 |
actatatatattacattttgatttgtactatatctctgc |
241 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
38898629 |
actatatatattacattttgatttgtcctatatctctgc |
38898591 |
T |
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