View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_18 (Length: 240)
Name: NF10878_low_18
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 18106565 - 18106679
Alignment:
| Q |
118 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgcattatttctacaaaattg |
217 |
Q |
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| T |
18106565 |
tagttagttctatcttttgtcgtagacggccttgatattgtt-agtagtattattattttggcgatacacatatttgactgcattatttctacaaaattg |
18106663 |
T |
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| Q |
218 |
aagatttatcttagtt |
233 |
Q |
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| T |
18106664 |
aagctttatcttagtt |
18106679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 18139411 - 18139460
Alignment:
| Q |
64 |
atcttcttccctgaagaatacacggttcttgttccctactgtgacaggac |
113 |
Q |
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| T |
18139411 |
atcttcttccctgaagaatatacggttcttgttccctactgagataggac |
18139460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 18082426 - 18082374
Alignment:
| Q |
61 |
agaatcttcttccctgaagaatacacggttcttgttccctactgtgacaggac |
113 |
Q |
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| T |
18082426 |
agaatcttctttcctgaagaatatacggttcttgttccctactgagataggac |
18082374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 18096843 - 18096791
Alignment:
| Q |
61 |
agaatcttcttccctgaagaatacacggttcttgttccctactgtgacaggac |
113 |
Q |
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| T |
18096843 |
agaatcttcttccctgaaaaatatacggttcttgttccctactgagataggac |
18096791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 37876099 - 37876180
Alignment:
| Q |
118 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
199 |
Q |
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| T |
37876099 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
37876180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 23895582 - 23895501
Alignment:
| Q |
118 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895582 |
tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc |
23895501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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