View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_19 (Length: 233)
Name: NF10878_low_19
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_19 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 37876454 - 37876253
Alignment:
| Q |
10 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataataata---taaaatcaggcattcataaaacatcacttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |
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| T |
37876454 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
37876355 |
T |
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| Q |
107 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876354 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagac-ccccacatggagaaggtataatgccggtttgcaaaggaacac |
37876256 |
T |
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| Q |
207 |
aca |
209 |
Q |
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||| |
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| T |
37876255 |
aca |
37876253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 23895227 - 23895428
Alignment:
| Q |
10 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataa---taataatataaaatcaggcattcataaaacatcacttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
23895227 |
atcaaaactataatttaccattggagtcttttagacatttcatgtctcaaaatctataataataataatataaaatcaggcattcataaaacttcccttt |
23895326 |
T |
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| Q |
107 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895327 |
tatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaaga-cccccacatggagaaggtataatgccggtttgcaaaggaacac |
23895425 |
T |
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| Q |
207 |
aca |
209 |
Q |
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||| |
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| T |
23895426 |
aca |
23895428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 18107053 - 18106896
Alignment:
| Q |
73 |
aatataaaatcaggcattcataaaacatcacttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagaccccccacat |
172 |
Q |
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||||||||||||| ||| |||||| | || ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| | ||||||| |
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| T |
18107053 |
aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaaga-ctcccacat |
18106956 |
T |
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| Q |
173 |
ggagaaggtataatgccggtttgcaaaggaacacacaagactggaatgaaacctacaattg |
233 |
Q |
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|| |||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||| |
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| T |
18106955 |
agaaaaggtataatgccggtgtgcaaaggaacacac-agaccgaaatgaaacctataattg |
18106896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 18138725 - 18138786
Alignment:
| Q |
10 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
71 |
Q |
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|||||||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
18138725 |
atcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataa |
18138786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 18097626 - 18097565
Alignment:
| Q |
10 |
atcaaaactataatttaccattggagtcttttagacataccatgtctcaaaatctataataa |
71 |
Q |
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||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
18097626 |
atcaaaactataatttagcgttgaagtctattagacattccatgtctcaaaatctataataa |
18097565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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