View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_2 (Length: 442)
Name: NF10878_low_2
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 41622297 - 41621883
Alignment:
| Q |
12 |
agagagaggaagtcattttaattttgaaagagaggggaaaattaaagaaggaattggtggaggtgattattataagaatggaggagacatagatagatgg |
111 |
Q |
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| T |
41622297 |
agagagaggaagtcattttgatttggaatgagaggggaaaattaaagaaggaattggtggaggtgattattataagaatggaggagacatagatagatgg |
41622198 |
T |
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| Q |
112 |
ttataagaatggagggtggtgtgaaattttaggtgggtttaataaaagcactttcaagttagccagcatgattggttggactttcaagtgaggcaacaat |
211 |
Q |
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| T |
41622197 |
ttataagaatggagggtggtgtgaaattttaggtgggtttaataaaagcactttcaagttagccagcatgattggttggactttcaagtgaggcaacaat |
41622098 |
T |
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| Q |
212 |
acaaggcatgtaggtcctttatggtaatgtacatacagagacgattagattcggagctgaaagagatctctctccaaatctaacggtccctataactgca |
311 |
Q |
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| T |
41622097 |
acaaggcatgtagatcctttatggtaatgtacatacagagacaattagatttgga---gaaacagttctctcttcaaatctaacggtctctataactgca |
41622001 |
T |
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| Q |
312 |
atattatgttgtagtcgtagaggacttgattttcaacgtagggtcagggattcgagcaccttaaattattagatgattatggttcaaattctgacttttg |
411 |
Q |
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| T |
41622000 |
atattatgttgtagttgtataggattgaatttttaacgtagggtcacggattcgagcaccttaaatgattagatgaatatggttcaaattctgacttttg |
41621901 |
T |
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| Q |
412 |
tatacggagaaaaatgtg |
429 |
Q |
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| T |
41621900 |
tatacggagaaaaatgtg |
41621883 |
T |
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