View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10878_low_21 (Length: 203)
Name: NF10878_low_21
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 14135022 - 14135081
Alignment:
| Q |
53 |
aatttgaaaattcttaatcaaacatatattcataagttggcttgccaactaactccttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14135022 |
aatttgaaaattcttaatcaaacatatattcataagttggcttgccaactaactccttct |
14135081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 14134953 - 14135004
Alignment:
| Q |
16 |
atgaaacccaaaggaagagggtggtcttggttttcgtaatttgaaaattctt |
67 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14134953 |
atgaaacccaaagggagagggtggtcttggttttcgtaatttgaaaattctt |
14135004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University