View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_3 (Length: 388)
Name: NF10878_low_3
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 30875792 - 30876152
Alignment:
| Q |
18 |
gaagaactgaatatagaaaccctccttctttttcttgctcttagcatatcctgtgaaacagaaaatctactaaggacagacttaagagcttggtgaacag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30875792 |
gaagaactgaatatagaaaccctccttctttttcttgctcttagcatatcctgtgaaacagaaaatctactaagtacagacttaagagcttggtgaacag |
30875891 |
T |
|
| Q |
118 |
aaccagcaagaaactgtctgtattcagcagcatcaaagttttgttcttcacagcttattacaacaaagacattcttcattctgtctccaaaagttgcaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30875892 |
aaccagcaagaaactgtctgtattcagcagcatcaaagttttgttcttcacagcttattacaacaaagacattcttcattctgtctccaaaagttgcaat |
30875991 |
T |
|
| Q |
218 |
atctgctttcatgatgatgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30875992 |
atctgctttcatgatgatgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaa |
30876091 |
T |
|
| Q |
318 |
aaaggaaaaccgttccaacctccctcttgttcttcaacacttatttcatcattgtcctttg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30876092 |
aaaggaaaaccgttccaacctccctcttgttcttcaacacttatttcatcattgtcctttg |
30876152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 39331433 - 39331793
Alignment:
| Q |
18 |
gaagaactgaatatagaaaccctccttctttttcttgctcttagcatatcctgtgaaacagaaaatctactaaggacagacttaagagcttggtgaacag |
117 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||| | | || ||||| |||||||||||||||||| ||| ||||| |||||||||| ||||| | |
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| T |
39331433 |
gaagaactaaatatagaaatcctccttctctttctagtttctaagatatcttgtgaaacagaaaatctatcaagtacagatctaagagcttgatgaaccg |
39331532 |
T |
|
| Q |
118 |
aaccagcaagaaactgtctgtattcagcagcatcaaagttttgttcttcacagcttattacaacaaagacattcttcattctgtctccaaaagttgcaat |
217 |
Q |
| |
|
| || ||||||||||||| || |||||| | ||||| |||||||||| ||||| |||| ||||||||||| |||||||| |||| ||||||||||| |
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| T |
39331533 |
atccggcaagaaactgtcgatactcagcatcttcaaaattttgttctttgcagctaattatgacaaagacatttttcattctacctcccaaagttgcaat |
39331632 |
T |
|
| Q |
218 |
atctgctttcatgatgatgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaa |
317 |
Q |
| |
|
||||| | || || || |||||||| ||||| || |||| |||||||| |||||||||||| |||| |||||||||||||| ||||||| |||||||| |
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| T |
39331633 |
ctctgcccttattatcataagatgaagtgcatcaagtgcttttcttatatcagacaataaaccgggtttatattcacaacataatgatgctctaattgaa |
39331732 |
T |
|
| Q |
318 |
aaaggaaaaccgttccaacctccctcttgttcttcaacacttatttcatcattgtcctttg |
378 |
Q |
| |
|
|||| ||||| || | || || |||||| |||||| ||||| |||||| |||| |||| |
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|
| T |
39331733 |
taaggcaaaccatttaatccaccttcttgtgattcaactcttatctcatcactgtcttttg |
39331793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 32726374 - 32726517
Alignment:
| Q |
185 |
gacattcttcattctgtctccaaaagttgcaatatctgctttcatgatgatgagatgaagagcatctagggcttgtcttatattagacaataaacctggt |
284 |
Q |
| |
|
||||||||| || || |||| ||||||||||| | ||| || || || || ||||||| |||| || |||| |||||||| |||||||||| | ||| |
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| T |
32726374 |
gacattctttatactacctcccaaagttgcaatctttgcctttattatcataggatgaagtccatcaagtgcttttcttatatcagacaataaatccggt |
32726473 |
T |
|
| Q |
285 |
tgatattcacaacatagtgatgctttaattgaaaaaggaaaacc |
328 |
Q |
| |
|
| |||| |||||||||||||||| |||||||| |||| ||||| |
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|
| T |
32726474 |
ttgtattgacaacatagtgatgctctaattgaataagggaaacc |
32726517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 32726212 - 32726326
Alignment:
| Q |
18 |
gaagaactgaatatagaaaccctccttctttttcttgctcttagcatatcctgtgaaacagaaaatctactaaggacagacttaagagcttggtgaacag |
117 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||| | | || ||||| ||||||||| |||||||| ||| ||||| |||||||||| ||||||| |
|
|
| T |
32726212 |
gaagagctgaatatagaaattctccttctctttctagtttctaagatatcttgtgaaacaaaaaatctatcaagtacagatctaagagcttgatgaacag |
32726311 |
T |
|
| Q |
118 |
aaccagcaagaaact |
132 |
Q |
| |
|
| ||||||| ||||| |
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|
| T |
32726312 |
atccagcaacaaact |
32726326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 44187073 - 44187381
Alignment:
| Q |
18 |
gaagaactgaatatagaaaccctccttctttttcttgctcttagcatatcctgtgaaacagaaaatctactaaggacagacttaagagcttggtgaacag |
117 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||| | | || ||||| |||||||||||||||| | ||| ||||| |||||||||| ||||||| |
|
|
| T |
44187073 |
gaagagctgaatatagaaattctccttctctttctagtttctaagatatcttgtgaaacagaaaatccatcaagtacagatctaagagcttgatgaacag |
44187172 |
T |
|
| Q |
118 |
aaccagcaagaaactgtctgtattcagcagcatcaaagttttgttcttcacagcttattacaacaaagacattcttcattctgtctccaaaagttgcaat |
217 |
Q |
| |
|
| ||||||| ||||| | || || || | ||||| || ||||||| ||||| |||| ||||| ||||||||| ||||| |||| ||||||||||| |
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| T |
44187173 |
atccagcaacaaact--cgatactcgacatcttcaaaattctgttctttgcagctaattataacaacgacattctttattctacctcccaaagttgcaat |
44187270 |
T |
|
| Q |
218 |
atctgctttcatgatgatgagatgaagagcatctagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaa |
317 |
Q |
| |
|
| ||| || || || || ||||||| ||||| || |||| |||||||| |||||||||| | |||| |||| |||||||||||||||| |||||||| |
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| T |
44187271 |
ctttgcctttattatcataggatgaagtgcatcaagtgcttttcttatatcagacaataaatccggtttgtattgacaacatagtgatgctctaattgaa |
44187370 |
T |
|
| Q |
318 |
aaaggaaaacc |
328 |
Q |
| |
|
|||| ||||| |
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|
| T |
44187371 |
taagggaaacc |
44187381 |
T |
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