View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_4 (Length: 378)
Name: NF10878_low_4
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 37797043 - 37796700
Alignment:
| Q |
1 |
aatgccccgggtgaggaaaatgaagatcaagattcttctaaataagtgcatcagtggaaatataaatatctctttattagacggtattattgtaactttg |
100 |
Q |
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| T |
37797043 |
aatgccccgggtgaggaaaatgaagatcaagattcttctaaataagtgcatcagtggaaatataaatatctctttattagacggtattattgtaactttg |
37796944 |
T |
|
| Q |
101 |
tcaaactcatcgaataattaaaataaaaattgtgttgttttttacggcactaaattcacttccctctttttggccttgccatacagacttctggtacaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37796943 |
tcaaactcatcgaataattaaaataaaaattgtgttgttttttacggcactaaatccacttccctctttttggccttgccatacagacttctggtacaat |
37796844 |
T |
|
| Q |
201 |
aagcaatcgactttttgttttcacaacaaagggtttcttgtctaaggaccttaatcattttctactctccctcctacactctttgtttccactttatgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37796843 |
aagcaatcgactttttgttttcacaacaaagggtttcttgtctaaggaccttaatcattttctactctccctcctacactctttgtttccactttatgtc |
37796744 |
T |
|
| Q |
301 |
tttatctctcaaattattaacctctcactcatctttacctcttc |
344 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37796743 |
tttatctctcaaattgttaacctctcactcatctttacctcttc |
37796700 |
T |
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