View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10878_low_5 (Length: 378)

Name: NF10878_low_5
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10878_low_5
NF10878_low_5
[»] chr6 (24 HSPs)
chr6 (10-376)||(31284503-31284868)
chr6 (48-311)||(26623232-26623514)
chr6 (48-311)||(26729210-26729492)
chr6 (141-217)||(26623636-26623712)
chr6 (141-217)||(26729613-26729689)
chr6 (23-118)||(27214648-27214743)
chr6 (23-118)||(27234485-27234580)
chr6 (62-124)||(28234830-28234892)
chr6 (62-123)||(28181381-28181442)
chr6 (62-123)||(28227217-28227278)
chr6 (62-124)||(26937373-26937435)
chr6 (62-124)||(28185633-28185695)
chr6 (62-124)||(28297571-28297633)
chr6 (62-124)||(28325744-28325806)
chr6 (62-124)||(28514440-28514502)
chr6 (331-368)||(25483611-25483648)
chr6 (220-269)||(26656434-26656483)
chr6 (220-269)||(26762405-26762454)
chr6 (78-114)||(25580002-25580038)
chr6 (78-114)||(26056209-26056245)
chr6 (78-114)||(26076179-26076215)
chr6 (24-124)||(27337923-27338023)
chr6 (24-124)||(27398663-27398763)
chr6 (72-124)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (62-124)||(34992-35054)
scaffold0038 (62-123)||(27715-27776)
scaffold0038 (62-124)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (78-167)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (68-124)||(3279976-3280032)
[»] chr4 (2 HSPs)
chr4 (55-124)||(5090806-5090875)
chr4 (173-288)||(18731171-18731287)
[»] scaffold0019 (1 HSPs)
scaffold0019 (68-124)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 31284503 - 31284868
Alignment:
Q  10 tggagaagcataggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284503 tggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaac 31284602  T
Q  110 ttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaa 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284603 ttgtctggcgaccatcgttctcctgggtagccttcttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaa 31284702  T
Q  210 aagggaaacattttttatttatatatttaaacaaatattagttatttgtatgtcaaaacacatagaattgtacgatataattgtcaagatatagatgtga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| | ||||||||||||||||||    
T  31284703 aagggaaacattttttatttatatatttaaacaaatattagtta-ttgtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtga 31284801  T
Q  310 ttgnnnnnnnatgtgtgtaccaacttatcttattgggcatgaacagatatgaacacaagcttgctgg 376  Q
    |||       || |||  ||||||||||||| ||||||||||| ||||||||| |||||||| ||||    
T  31284802 ttgtttttttatttgttcaccaacttatcttgttgggcatgaatagatatgaatacaagcttactgg 31284868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 48 - 311
Target Start/End: Original strand, 26623232 - 26623514
Alignment:
Q  48 ataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttc 147  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  26623232 ataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaagcagctaacttgtctggagaccatcgtcatcctgggtagcctacttc 26623331  T
Q  148 acttcaatcttgttttgcc----------------ttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaac---attttttatt 228  Q
    |||||||||||||||||||                |||||||||| ||||||| |||||||||||||| ||||||||||||||||||   ||||||| ||    
T  26623332 acttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtt 26623431  T
Q  229 tatatatttaaacaaatattagttatttgtatgtcaaaacacatagaattgtacgatataattgtcaagatatagatgtgatt 311  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||||| || |||||||| |||||||| ||||||||    
T  26623432 tatatatttaaacaaatattaggtatttgtatatcaaaacatttagaattgtatgacataattgttaagatataaatgtgatt 26623514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 48 - 311
Target Start/End: Original strand, 26729210 - 26729492
Alignment:
Q  48 ataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttc 147  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  26729210 ataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaagcagctaacttgtctggagaccatcgtcatcctgggtagcctacttc 26729309  T
Q  148 acttcaatcttgttttgcc----------------ttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaac---attttttatt 228  Q
    |||||||||||||||||||                |||||||||| ||||||| |||||||||||||| ||||||||||||||||||   ||||||| ||    
T  26729310 acttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtt 26729409  T
Q  229 tatatatttaaacaaatattagttatttgtatgtcaaaacacatagaattgtacgatataattgtcaagatatagatgtgatt 311  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||||| || |||||||| |||||||| ||||||||    
T  26729410 tatatatttaaacaaatattaggtatttgtatatcaaaacatttagaattgtatgacataattgttaagatataaatgtgatt 26729492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 26623636 - 26623712
Alignment:
Q  141 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 217  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26623636 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26623712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 26729613 - 26729689
Alignment:
Q  141 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 217  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26729613 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26729689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 27214648 - 27214743
Alignment:
Q  23 gctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggc 118  Q
    |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |||||||| ||||||    
T  27214648 gctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27214743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 27234580 - 27234485
Alignment:
Q  23 gctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggc 118  Q
    |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |||||||| ||||||    
T  27234580 gctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27234485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 28234830 - 28234892
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  28234830 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 28234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 28181381 - 28181442
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 123  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28181381 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 28181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 28227217 - 28227278
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 123  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28227217 atggataggttgcagaaatggaagatggctcttactcaaactgctaacttctctggccacca 28227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 26937373 - 26937435
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||  |||||||||||||||||||  ||||| || |||||||||||| |||||    
T  26937373 atggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccat 26937435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 28185633 - 28185695
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28185633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 28297633 - 28297571
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28297633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28297571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 28325744 - 28325806
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  28325744 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 28325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 28514440 - 28514502
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28514440 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28514502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 25483611 - 25483648
Alignment:
Q  331 aacttatcttattgggcatgaacagatatgaacacaag 368  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  25483611 aacttatcttattggacatgaatagatatgaacacaag 25483648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 26656434 - 26656483
Alignment:
Q  220 ttttttatttatatatttaaacaaatattagttatttgtatgtcaaaaca 269  Q
    |||||||||||| ||||||||||| ||| |||||||| ||||| ||||||    
T  26656434 ttttttatttatgtatttaaacaagtataagttatttatatgttaaaaca 26656483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 26762405 - 26762454
Alignment:
Q  220 ttttttatttatatatttaaacaaatattagttatttgtatgtcaaaaca 269  Q
    |||||||||||| ||||||||||| ||| |||||||| ||||| ||||||    
T  26762405 ttttttatttatgtatttaaacaagtataagttatttatatgttaaaaca 26762454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 25580002 - 25580038
Alignment:
Q  78 aatggaagatagctcttactcaagcagctaacttgtc 114  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  25580002 aatggaagatagctcttacccaagctgctaacttgtc 25580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 26056209 - 26056245
Alignment:
Q  78 aatggaagatagctcttactcaagcagctaacttgtc 114  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26056209 aatggaagatggctcttactcaagctgctaacttgtc 26056245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 26076179 - 26076215
Alignment:
Q  78 aatggaagatagctcttactcaagcagctaacttgtc 114  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26076179 aatggaagatggctcttactcaagctgctaacttgtc 26076215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 27338023 - 27337923
Alignment:
Q  24 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 123  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27338023 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27337924  T
Q  124 t 124  Q
    |    
T  27337923 t 27337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 27398763 - 27398663
Alignment:
Q  24 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 123  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27398763 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27398664  T
Q  124 t 124  Q
    |    
T  27398663 t 27398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 28098267 - 28098215
Alignment:
Q  72 tgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    |||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  28098267 tgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 28098215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 34992 - 35054
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  34992 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 35054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 27715 - 27776
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 123  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  27715 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 27776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 117059 - 117121
Alignment:
Q  62 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  117059 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 117121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 28127570 - 28127481
Alignment:
Q  78 aatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgcct 167  Q
    |||||||||||||||| || ||||| ||||||||||| ||| |||||  |  ||| ||||| ||||||  |||| |||||||||||||||    
T  28127570 aatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtccagggtaccctactatacttaaatcttgttttgcct 28127481  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 3279976 - 3280032
Alignment:
Q  68 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  3279976 aggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 3280032  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 5090875 - 5090806
Alignment:
Q  55 agatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    |||| ||||||| | |||||| |||||| |||| |||||||  ||||||||||| ||||||||| |||||    
T  5090875 agataatatggagaagttgcagaaatgggagatggctcttaagcaagcagctaatttgtctggctaccat 5090806  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 18731287 - 18731171
Alignment:
Q  173 aatttttattcctcaatcattccatataaatgcttaaaagggaaacat-tttttatttatatatttaaacaaatattagttatttgtatgtcaaaacaca 271  Q
    ||||||||||||||||| || |||| | || || ||||  |||||||  ||||| |||| || ||||||||| |||||||||||| || ||||||| |      
T  18731287 aatttttattcctcaataataccatcttaaagcctaaattggaaacacctttttttttacatttttaaacaagtattagttatttataagtcaaaatagt 18731188  T
Q  272 tagaattgtacgatata 288  Q
    ||||| |||| ||||||    
T  18731187 tagaaatgtatgatata 18731171  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 58196 - 58140
Alignment:
Q  68 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 124  Q
    |||||||| |||||||||| ||||||||||||  | |||||||| |||||| |||||    
T  58196 aggttgcagaaatggaagacagctcttactcagactgctaacttctctggccaccat 58140  T

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