View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10878_low_6 (Length: 357)
Name: NF10878_low_6
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 8207739 - 8208078
Alignment:
| Q |
1 |
attgcaagcatttgaatcttgcttacataccagttataaaatcaagtaatcacatcttgtttacaactatcatgccacagacattgcaacagaaaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8207739 |
attgcaagcatttgaatcttgcttacataccagttataaaatcaagtaatcacatcttgtttacaactatcatgccacagacattgcaacagaaaaacaa |
8207838 |
T |
|
| Q |
101 |
aaatcaaagttcaactttcattacaactagtgatgtaatcacattatcataagcaatcacacattaagcctaactaactcacataacaataacctaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8207839 |
aaatcaaagttcaactttcattacaactagtgatgtaatcacattatcataagcaatcacacattaagcctaactaactcacataacaataacctaactc |
8207938 |
T |
|
| Q |
201 |
taaatttggtatacttattttaattaataaaaagttttaggtcattgaaacaccaatattaaaaactattattaactcacctccatgagctataatcatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8207939 |
taaatttggtatacttattttaattaataaaaagttttaggtcattgaaacaccaatatt-aaaagaattattaactcacctccatgagctataatcatg |
8208037 |
T |
|
| Q |
301 |
tacgatcaaatattaaaaagaactttgtctactttcctaac |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8208038 |
tacgatcaaatattaaaaagaactttgtctactttcctaac |
8208078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 12703829 - 12703866
Alignment:
| Q |
38 |
aaaatcaagtaatcacatcttgtttacaactatcatgc |
75 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12703829 |
aaaatcaagtaaccacatcttgtttacaactatcatgc |
12703866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University