View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10878_low_7 (Length: 347)
Name: NF10878_low_7
Description: NF10878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10878_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 2398609 - 2398282
Alignment:
| Q |
1 |
tagtacagtaataataaggatcaaatggttaattttgaccaacatgtttttaggtgaccatgtgttatgttttttccctcacatttcaactatagttacc |
100 |
Q |
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| T |
2398609 |
tagtacagtaataataaggatcaaatggttaattttgaccaacatgtttttaggtgaccatgtgtgatgttttttccctcacatttcaactatagttacc |
2398510 |
T |
|
| Q |
101 |
acactttaattaatttcatatgcaaagtacggcatgtgtaggtaaccgatactgacatagtggatgcatgcaggtaccagcttctaaggtcctacaagaa |
200 |
Q |
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| T |
2398509 |
acactttaattaatttcatatgcaaagtacggcatgtgtaggtaaccgatactgacatagtggatgcatgcaggtaccagcttctaaggtcctacaagaa |
2398410 |
T |
|
| Q |
201 |
acctgcaactatatcagaaacttacaaagagaggttgatgatttaagcctgagattgtctcagttgttggccacaattgattctgatagtgctgaagctt |
300 |
Q |
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| T |
2398409 |
acctgcaactatatcagaaacttacaaagagaggttgatgatttaagcctgagattgtctcagttgttggccacaattgattctgatagtgctgaagctt |
2398310 |
T |
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| Q |
301 |
caatcattaggagcctacttaaccaatg |
328 |
Q |
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| T |
2398309 |
caatcattaggagcttacttaaccaatg |
2398282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 3398394 - 3398272
Alignment:
| Q |
168 |
atgcaggtaccagcttctaaggtcctacaagaaacctgcaactatatcagaaacttacaaagagaggttgatgatttaagcctgagattgtctcagttgt |
267 |
Q |
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| T |
3398394 |
atgcaggtatcagcatctaaggtcctacaagagacttgtaactacataagaaacttacacagagaagttgatgatttaagtgaaagactgtctcagttat |
3398295 |
T |
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| Q |
268 |
tggccacaattgattctgatagt |
290 |
Q |
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||| |||||||||| |||||||| |
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| T |
3398294 |
tggtcacaattgatgctgatagt |
3398272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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