View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10879_high_1 (Length: 396)
Name: NF10879_high_1
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 40211366 - 40210995
Alignment:
| Q |
19 |
gctattgccgcccacttagccaattccattgcattttttgttctcatttttcaaatatataacgtgcataatataatttgtcaaatgaatttcaattttc |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
40211366 |
gctattgccgcccacttagccaatttcattgcattttttgttctcatttttcaaatatataatgtgcataatataatttgtcaattgaatt-caattttc |
40211268 |
T |
|
| Q |
119 |
aaacacaaacacaatcaatgatgctatgatatggctaagaaagaaccacgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40211267 |
aaacacaaacacaatcaatgatgctatgatatggctaagaaagaaccacgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttg |
40211168 |
T |
|
| Q |
219 |
cttctgtaagatgagaaggacctttttgatggtcggtgtagtttttaattaaatgttataatttctgatttcattagcttatctttgcactttcagctga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40211167 |
cttctgtaagatgagaaggacctttttgatggtcggtgtagtttttaattaaatgttataatttctgatttcattagcttatctttgcactttcagctga |
40211068 |
T |
|
| Q |
319 |
aggttttttcttgttggcttatgatgaaattgtatgcttattgcttattctgacttggactgcctatgcttct |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
40211067 |
aggttttttcttgttggcttatgatgaaattgtatgcttattgcttattctgacttggactgccaatgtttct |
40210995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University