View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_high_11 (Length: 250)
Name: NF10879_high_11
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 9764584 - 9764370
Alignment:
| Q |
23 |
cacaatagaatctgaaccaccctccattacatccactcacatagtgtttgatacatcataagtatcaaaagacaaacccatcatagccatacccctacac |
122 |
Q |
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| T |
9764584 |
cacaatagaatctgaaccaccctccattacatccactcacacagtgtttgatacatcataagtatcaaaagacaaacccatcatagccatacccctacac |
9764485 |
T |
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| Q |
123 |
tttgccaaattagaaacgaaccaaacagattctgatgttctcatgcttgaggcatcataagatgttatctaacctggaacacaacttctcaccaccactc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9764484 |
tttgccaaattagaaacgaaccaaacagattctgatgttctcatgcttgaggcatcataagatgttatttaacctggaacacaacttctcaccaccactc |
9764385 |
T |
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| Q |
223 |
aaacaaccttgacct |
237 |
Q |
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| T |
9764384 |
aaacaaccttgacct |
9764370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 24493421 - 24493575
Alignment:
| Q |
71 |
tgatacatcataagtatcaaaagacaaacccatcatagccatacccctacactttgccaaattagaaacgaaccaaacagattctgatgttctcatgctt |
170 |
Q |
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||||||||||| ||||||| |||||||||| ||||||||||| || |||| ||||| ||| ||||| |||||||| || |||||||||||||||||| |
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| T |
24493421 |
tgatacatcatcagtatcagaagacaaaccaatcatagccatgaccttacaatttgcaaaacctgaaaccaaccaaactgactctgatgttctcatgctt |
24493520 |
T |
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| Q |
171 |
gaggcatcataagatgttatctaacctggaacacaacttctcaccaccactcaaa |
225 |
Q |
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| T |
24493521 |
gaggcgtcagaagatgttatccaacctgaaactcaacctcttacctccactcaaa |
24493575 |
T |
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