View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_high_3 (Length: 358)
Name: NF10879_high_3
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 26061290 - 26061153
Alignment:
| Q |
30 |
gcagcacagacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagcggtacattgagtactacaccaagaacgctgatttggatttt |
129 |
Q |
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| T |
26061290 |
gcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagttgtacattgagtactacaccaagaacgctgatttggatttt |
26061191 |
T |
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| Q |
130 |
ggataacaaaagtcacgactcttgcaaaaggatctcat |
167 |
Q |
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| T |
26061190 |
ggagaacaaaagtcacgactcttgcaaaaggatctcat |
26061153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 26081260 - 26081123
Alignment:
| Q |
30 |
gcagcacagacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagcggtacattgagtactacaccaagaacgctgatttggatttt |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26081260 |
gcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagttgtacattgagtactacaccaagaacgctgatttggatttt |
26081161 |
T |
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| Q |
130 |
ggataacaaaagtcacgactcttgcaaaaggatctcat |
167 |
Q |
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| T |
26081160 |
ggagaacaaaagtcacgactcttgcaaaaggatctcat |
26081123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 25488042 - 25487905
Alignment:
| Q |
30 |
gcagcacagacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagcggtacattgagtactacaccaagaacgctgatttggatttt |
129 |
Q |
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| T |
25488042 |
gcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagttgtacatcgagtactacaccaagaacgctgatttggatttt |
25487943 |
T |
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| Q |
130 |
ggataacaaaagtcacgactcttgcaaaaggatctcat |
167 |
Q |
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| T |
25487942 |
ggagaacaaaagtcacgactcttgcaaaaggatctcat |
25487905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 27659678 - 27659811
Alignment:
| Q |
32 |
agcacagacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagcggtacattgagtactacaccaagaacgctgatttggattttgg |
131 |
Q |
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|||||| ||||||||| |||||| |||||||| |||||||||||| ||||||||| || ||||||||| || ||||| ||| ||||| ||||||||| |
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| T |
27659678 |
agcacaaacatcctccttaaaaacttacatcatgtctcaccatataaaaaccaga---gtgcattgagtattataccaataacattgattaggattttgg |
27659774 |
T |
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| Q |
132 |
ataacaaaagtcacgactcttgcaaaaggatctcataa |
169 |
Q |
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| T |
27659775 |
agaacaaaag-cacgactcttgcaaaaggatctcataa |
27659811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 27661450 - 27661513
Alignment:
| Q |
280 |
tcatcaactgaatgtagagcaatatttaaaaacactgaatctttacaataacttatgaagactt |
343 |
Q |
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| T |
27661450 |
tcatcaactaaatgtagagcaatattcaaaaagtctgaatctttataataactcatgaagactt |
27661513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 27587803 - 27587861
Alignment:
| Q |
30 |
gcagcacagacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagagc |
88 |
Q |
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| T |
27587803 |
gcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagc |
27587861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 26060112 - 26060079
Alignment:
| Q |
169 |
atgtactacttaaattatccatacatttataggt |
202 |
Q |
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| T |
26060112 |
atgtactacttaaattatccatacatttataggt |
26060079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 26080082 - 26080049
Alignment:
| Q |
169 |
atgtactacttaaattatccatacatttataggt |
202 |
Q |
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| T |
26080082 |
atgtactacttaaattatccatacatttataggt |
26080049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 27700867 - 27700902
Alignment:
| Q |
134 |
aacaaaagtcacgactcttgcaaaaggatctcataa |
169 |
Q |
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| T |
27700867 |
aacaaaggtcacgactcttgcaaaaggatctcataa |
27700902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 27599642 - 27599691
Alignment:
| Q |
30 |
gcagcacagacatcctccataaaaaattacatcaggtctcaccatatcaa |
79 |
Q |
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|||||||| |||||||| |||||| ||||||||||| |||||||||||| |
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| T |
27599642 |
gcagcacaagcatcctccctaaaaacttacatcaggtatcaccatatcaa |
27599691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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