View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10879_high_5 (Length: 339)

Name: NF10879_high_5
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10879_high_5
NF10879_high_5
[»] chr5 (10 HSPs)
chr5 (1-338)||(30007239-30007576)
chr5 (1-339)||(29964958-29965296)
chr5 (1-339)||(30009502-30009840)
chr5 (1-339)||(29953690-29954028)
chr5 (1-339)||(29946729-29947067)
chr5 (10-339)||(30067948-30068277)
chr5 (1-339)||(29995449-29995786)
chr5 (1-339)||(30001122-30001460)
chr5 (1-339)||(30043422-30043760)
chr5 (1-339)||(29944757-29945095)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 30007576 - 30007239
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||  | ||||||||||||||||||||||||||||| ||  ||| |    
T  30007576 tggtatagattcaaactcatgtccttgataattcattttcttgtcaataaatctctctgggtaaaattcatcagcattttctgaccaaacgttacaatct 30007477  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||||| |||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30007476 ctcccaatagcccatgcatttactataactcgagtctttttcgttataaaatatccatcaattgttatgctctctctacattcacgagggattaataagg 30007377  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    || |||||||  |||||| |||||| ||||| |||||||||||||||||  | ||||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  30007376 gtccaacaggataaagtcttaaggtttcatcaacaaccatatctaagtaattaaacttcttcagatccttctcttcaaccattcttttatttcctacttc 30007277  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttg 338  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30007276 attttgtatctcatcttgaagaattttcatcactcttg 30007239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 29965296 - 29964958
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    ||||||||||||||  |  ||||||||||||||||||||||| ||| |||| || ||  ||||||| |||||||| |||||| |||||| |||||||| |    
T  29965296 tggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaatatttgaatct 29965197  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | ||||||||    
T  29965196 ctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagg 29965097  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    || |||||||| |||||| ||| |||||||| || ||||||||||||||  | ||||| |||||||| |||||||| |||||||||| ||||||||||||    
T  29965096 gtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatcattctcttcgaccattcttttatttcctacttc 29964997  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  29964996 attttgtatctcatcttgaagctttttcatcactcttgg 29964958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 30009502 - 30009840
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    ||||||||||||||  |  ||||||||||||||||||||||| ||| |||| || ||  ||||||| |||||||| |||||| |||||| |||||||| |    
T  30009502 tggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaatatttgaatct 30009601  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | ||||||||    
T  30009602 ctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagg 30009701  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    || |||||||| |||||| ||| |||||||| || ||||||||||||||  | ||||| |||||||| |||||||| |||||||||| ||||||||||||    
T  30009702 gtccaacagggtaaagtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatcattctcttcgaccattcttttatttcctacttc 30009801  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  30009802 attttgtatctcatcttgaagctttttcatcactcttgg 30009840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 29954028 - 29953690
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||| || || ||  | |||||||| || ||||||||||||||||||||||||| |    
T  29954028 tggtagagattcaaactcttgtccttgataattcattttcttgccaatgaatctctctgggtaaaattcttcggcattttctgaccaaacatttgaatct 29953929  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  29953928 ctccctatagcccatgcatttactataactcgagtcttttcctttataaaatatccatcaattgttacactctctctacattcacgagggagtaataagg 29953829  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    ||||||||||| |||||| ||| || ||||  || ||||| |||||||| ||||| || |  |||||||||||||||| |||||||||||||||||||||    
T  29953828 gtgcaacagggtaaagtcttaaagtttcatgaaccaccatctctaagtaacttaagttctctaaatctttctcttcaatcattctttcatttcctacttc 29953729  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    |||||||||||||||||||||  ||||||| || |||||    
T  29953728 attttgtatctcatcttgaaggattttcattacccttgg 29953690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 29947067 - 29946729
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    ||||||||||| || ||  ||||||| ||||||||||||| |||||||||| |||||  ||| |||||| |||  |||||||||||||||| | |||| |    
T  29947067 tggtatagatttaaacttatgtccttcataattcattttcatgtcaataaatctttctggatgaaattcttcataattttctgaccaaacactagaatct 29946968  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||| ||| ||||    
T  29946967 ctctctatagcccatgcatttactataactcgtgtcttttccattataaaatatccatcaattgttatactctctctacattcacgagggagtaacaagg 29946868  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    ||||||||||| |||||| ||| || ||||  || |||||||||||||| |||||||| |  |||||||||||||| |||||||||| ||||||||||||    
T  29946867 gtgcaacagggtaaagtcttaaagtttcatgaaccaccatatctaagtaacttaacttctctaaatctttctcttcgaccattcttttatttcctacttc 29946768  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||| |||||||||||  ||||||||||||||||    
T  29946767 attttgtatatcatcttgaagggttttcatcactcttgg 29946729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 30067948 - 30068277
Alignment:
Q  10 ttcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaatttctccctata 109  Q
    ||||| |||||||| |||||||||||||||||| |||||||| || |   |||||||||| ||||||||||||||||||||||| | || |||||||||     
T  30067948 ttcaaactcttgtctttgataattcattttcttttcaataaatctctttggataaaattcttcagcattttctgaccaaacattaggatctctccctatt 30068047  T
Q  110 gcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagggtgcaacag 209  Q
    |||||||||||||| |||| ||  |||||||||||||| |||||  |||||||||||||| ||||||||| || | |||||| || ||||||||||||||    
T  30068048 gcccatgcatttaccataattctcgtcttttcctttataaaataatcatcaattgttatgttctctctacatttaggagggactagtaagggtgcaacag 30068147  T
Q  210 ggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttcattttgtat 309  Q
    |  | |||| |||||| ||||| || ||||||||||||||  | ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  30068148 gatacagtcttaaggtttcatcaaccaccatatctaagtaattcaacttcttcaaatccttctcttcaaccattcttttatttcctacttcattttgtat 30068247  T
Q  310 ctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||||||| ||||||||||||||||    
T  30068248 ctcatcttgaagaattttcatcactcttgg 30068277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 29995786 - 29995449
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    |||||||||||||| |||||||||  ||||||||| ||| || |||||||| || ||  |||||||||| || |||||||||||||||||||| | || |    
T  29995786 tggtatagattcaaactcttgtccgagataattcagttt-ttctcaataaatctctctggataaaattcttcggcattttctgaccaaacattaggatct 29995688  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| || |||||||||||   |||||||||| || ||| |    
T  29995687 ctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaatg 29995588  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    ||||||||||| |||||| |||||||||||| || ||||||||||| ||  | ||||| |||| ||||||||| |||| | |||||| ||||||||||||    
T  29995587 gtgcaacagggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttcttcatatctttctcctcaatctttcttttatttcctacttc 29995488  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  29995487 attttgtatctcatcttgaagctttttcatcactcttgg 29995449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 30001460 - 30001122
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    |||||||||||||| |||||||||  ||||||||||||| || |||||||| || ||  | |||||||| ||||||||||||||||||||||  | || |    
T  30001460 tggtatagattcaaactcttgtccgagataattcatttttttctcaataaatctctctgggtaaaattcttcagcattttctgaccaaacatcaggatct 30001361  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||  ||||  |||||||||||||| ||||||||| |||||||||||||||||| |    
T  30001360 ctcccaattgcccatgcatttactataactcgtgtcttttcttttatagaataatcatcaattgttatgttctctctacattcacgagggattaataaag 30001261  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    ||||||||||  |||||| |||||| ||||| || |||||||||| |||  | || || |||||||| || |||||||||||||| | ||||||||||||    
T  30001260 gtgcaacaggataaagtcttaaggtttcatcaaccaccatatctaggtaattaaaattcttcaaatccttttcttcaaccattctcttatttcctacttc 30001161  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  30001160 attttgtatttcatcttgaagaattttcatcactcttgg 30001122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 30043422 - 30043760
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    |||||||||||||| |||||||||  ||||||||||||| || || | ||| || ||  | |||||||| | ||||||||||||||||||||| | || |    
T  30043422 tggtatagattcaaactcttgtccaagataattcatttttttctctacaaatctctctgggtaaaattctttagcattttctgaccaaacattaggatct 30043521  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||  ||||||||||| || ||| |    
T  30043522 ctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattgttgtgctctctctagattcacgagggactagtaacg 30043621  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    |||| || ||| |||||| |||||||||||| || ||||||||||| ||  | ||||| || | ||| ||||| | ||||||||||| ||||||||||||    
T  30043622 gtgctacggggtaaagtcttaaggtctcatcaaccaccatatctaaataattcaacttctttagatccttctcgttaaccattcttttatttcctacttc 30043721  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  30043722 attttgtatctcatcttgaagctttttcatcactcttgg 30043760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 29945095 - 29944757
Alignment:
Q  1 tggtatagattcaagctcttgtccttgataattcattttcttgtcaataaacctttcgcgataaaattcatcagcattttctgaccaaacatttgaattt 100  Q
    |||||||  ||||| ||||||||||| |||||||| |||||| | ||||||||| ||  || ||||||| ||||||||||||||||||||||| | || |    
T  29945095 tggtatactttcaaactcttgtccttcataattcaatttcttattaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatct 29944996  T
Q  101 ctccctatagcccatgcatttactataactcgtgtcttttcctttatgaaatatccatcaattgttatgctctctctacgttcacgagggattaataagg 200  Q
    ||| |||| |   |||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||| ||||||||||| ||| ||||    
T  29944995 ctcgctattgtaaatgcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagg 29944896  T
Q  201 gtgcaacagggaaaagtcgtaaggtctcatctacaaccatatctaagtagcttaacttgttcaaatctttctcttcaaccattctttcatttcctacttc 300  Q
    ||| ||| ||   ||||| ||| || ||||| || ||||||||||||||  | || || |||||||| || |||||||||||||| | ||||||||||||    
T  29944895 gtgaaactggatgaagtcttaaagtttcatcaaccaccatatctaagtaattaaaattcttcaaatccttttcttcaaccattctcttatttcctacttc 29944796  T
Q  301 attttgtatctcatcttgaagatttttcatcactcttgg 339  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29944795 attttgtatttcatcttgaagatttttcatcactcttgg 29944757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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