View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10879_low_11 (Length: 290)
Name: NF10879_low_11
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 43437243 - 43436969
Alignment:
| Q |
1 |
agaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtaccagttgatgattcgttgttgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43437243 |
agaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtacctgttgatgattcgttgttgtt |
43437144 |
T |
|
| Q |
101 |
agtatttcctttattacctctcacatttattataagccccttttgcaattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43437143 |
agtatttcctttattacctctctcatttattataagccccttttgcgattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgat |
43437044 |
T |
|
| Q |
201 |
atataaatgctcataaaataccccgttgtatatagattttgtgttcaactatgacttcttgtctcccaagttatt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43437043 |
atataaatgctcataaaataccccgttgtatatagattttgtgttcaactatgacttcttgtctcccaagttatt |
43436969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13827629 - 13827416
Alignment:
| Q |
1 |
agaatgctgttccaatgagctcaagccaagcttcttctgaaagaggcgatggagatgttgattccagatctgatgtaccagttgatgattcgttgttgtt |
100 |
Q |
| |
|
||||||||| ||| |||||| || |||||||| ||||||||||||| | ||||||| ||||| |||||||||||| | | ||||||||| ||||||| |
|
|
| T |
13827629 |
agaatgctgctccgatgagcacaggccaagctgcttctgaaagaggggctggagatattgatggcagatctgatgtccttgctgatgattcattgttgtg |
13827530 |
T |
|
| Q |
101 |
agtatttcctttattacctctcacatttattataagccccttttgcaattttcacgcatattaagaaaaatagataatgtatttaatatgttcatttgat |
200 |
Q |
| |
|
||||||||||||| || |||| |||||||||| ||||||||| |||||||||| |||| ||||||| ||||||||||||| ||| ||| ||||| || |
|
|
| T |
13827529 |
agtatttcctttactatctctgttatttattatatgccccttttccaattttcacatatatcaagaaaagtagataatgtattcaatgtgtccatttcat |
13827430 |
T |
|
| Q |
201 |
atataaatgctcat |
214 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
13827429 |
atatagaggctcat |
13827416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 3865880 - 3865824
Alignment:
| Q |
127 |
ttattataagccccttttgcaattttcacgcatattaagaaaaatagataatgtatt |
183 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| ||||| || |||||| |
|
|
| T |
3865880 |
ttattataagcctcttttgcaattttcacatatattaagaagaataggtagtgtatt |
3865824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University