View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_17 (Length: 250)
Name: NF10879_low_17
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40180974 - 40180738
Alignment:
| Q |
1 |
ttattaaaacctcttgtcaaactaaatttgttgaaacaccacctcataatcttatccgctttgtagagttggtttggaagaataataagaatctcatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40180974 |
ttattaaaacctcttgtcaaactaaatttgttgaaacaccaccttataatcttatccactttgtagaattggtttggaagaataataagaatctcatcac |
40180875 |
T |
|
| Q |
101 |
tacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180874 |
tacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaac |
40180775 |
T |
|
| Q |
201 |
ttgctgaagcatattggccactatcagaccggtattc |
237 |
Q |
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| T |
40180774 |
ttgctgaagcatattggccactatcagaccggtattc |
40180738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
| Q |
1 |
ttattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagttggtttggaagaataataagaa |
91 |
Q |
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| T |
44459275 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44459374 |
T |
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| Q |
92 |
tctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
137 |
Q |
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| T |
44459375 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
| Q |
1 |
ttattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagttggtttggaagaataataagaa |
91 |
Q |
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||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||||||||||||||||||| ||| | |
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| T |
44466808 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44466907 |
T |
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| Q |
92 |
tctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
137 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44466908 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
91 |
atctcatcactacccctgttctggaatcccttgt |
124 |
Q |
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| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
91 |
atctcatcactacccctgttctggaatcccttgt |
124 |
Q |
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| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
| Q |
168 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
229 |
Q |
| |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44460211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
| Q |
168 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
229 |
Q |
| |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44467744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 46358846 - 46358978
Alignment:
| Q |
1 |
ttattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagttggtttggaagaataataagaa |
91 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||||||||||||||||||| ||| | |
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| T |
46358846 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
46358945 |
T |
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| Q |
92 |
tctcatcactacccctgttctggaatcccttgt |
124 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46358946 |
cctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
| Q |
168 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
229 |
Q |
| |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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| T |
46359020 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
46359081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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