View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_18 (Length: 250)
Name: NF10879_low_18
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41132687 - 41132929
Alignment:
| Q |
1 |
atattatacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtcattagcccataagacaatgaaaacatatttga |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41132687 |
atattagacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtcattagcccataagacgatgaaaacatatttga |
41132786 |
T |
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| Q |
101 |
gcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaatccctttagtgaaagtacttgcatacacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41132787 |
gcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaatccctttagcgaaagtacttgcatacacata |
41132886 |
T |
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| Q |
201 |
aagtggagatgtaccaatatcaccatatacaattcctatgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41132887 |
aagtggagatgtaccaatatcaccatatacaattcctatgctt |
41132929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 7798396 - 7798360
Alignment:
| Q |
196 |
acataaagtggagatgtaccaatatcaccatatacaa |
232 |
Q |
| |
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| T |
7798396 |
acataaagtggagatgttccaatatcaccatatacaa |
7798360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 7817666 - 7817630
Alignment:
| Q |
196 |
acataaagtggagatgtaccaatatcaccatatacaa |
232 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
7817666 |
acataaagtggagatgttccaatatcaccatatacaa |
7817630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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