View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10879_low_2 (Length: 381)

Name: NF10879_low_2
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10879_low_2
NF10879_low_2
[»] chr6 (2 HSPs)
chr6 (95-365)||(34687691-34687961)
chr6 (5-95)||(34687996-34688086)
[»] chr2 (8 HSPs)
chr2 (95-365)||(26985642-26985902)
chr2 (97-252)||(27079470-27079625)
chr2 (92-231)||(27025601-27025740)
chr2 (5-95)||(26985937-26986028)
chr2 (21-95)||(27079360-27079434)
chr2 (47-95)||(27025771-27025819)
chr2 (314-344)||(27025488-27025518)
chr2 (308-344)||(27079689-27079725)
[»] chr7 (4 HSPs)
chr7 (190-344)||(30228123-30228291)
chr7 (22-83)||(30228414-30228475)
chr7 (95-156)||(30228304-30228365)
chr7 (21-77)||(30230600-30230656)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 95 - 365
Target Start/End: Complemental strand, 34687961 - 34687691
Alignment:
Q  95 tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687961 tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta 34687862  T
Q  195 attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687861 attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat 34687762  T
Q  295 catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaact 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687761 catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaact 34687691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 34688086 - 34687996
Alignment:
Q  5 gagaagcagagatcaagtacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt 95  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34688086 gagaaacagaaatcaagtacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt 34687996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 95 - 365
Target Start/End: Complemental strand, 26985902 - 26985642
Alignment:
Q  95 tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26985902 tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta 26985803  T
Q  195 attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          |||||||    
T  26985802 attcatgggataaactatcagatgaaattcaatattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagagg----------aatcaat 26985713  T
Q  295 catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaact 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26985712 catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaact 26985642  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 27079470 - 27079625
Alignment:
Q  97 taagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaat 196  Q
    |||||||||||||| |||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  27079470 taagtcccaaatcaaatgaaattactgggtgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaat 27079569  T
Q  197 tcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaa 252  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27079570 tcatgggataaactatcaaatgaaattcaatattaattcaaagtactttcaatgaa 27079625  T

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Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 27025740 - 27025601
Alignment:
Q  92 atgtttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaa 191  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||  |||||||| | ||||||||    
T  27025740 atgtgtaagtcccaaatcagatgaaattactcggtgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaa 27025641  T
Q  192 ttaattcatgggataaactatcagatgaaattcaatatta 231  Q
    |||||||||||| |||||| ||| ||||||||||||||||    
T  27025640 ttaattcatgggctaaactgtcaaatgaaattcaatatta 27025601  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 26986028 - 26985937
Alignment:
Q  5 gagaagcagagatcaag-tacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt 95  Q
    ||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26986028 gagaaacagaaatcaaggtacatataccaaaaagcgattagtcatcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt 26985937  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 27079360 - 27079434
Alignment:
Q  21 gtacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt 95  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||  || ||||||||    
T  27079360 gtacatataccaaaaatcgatcagtcatcaaagaaggaacttcatgatgctatacaatgtcttggcgagggatgt 27079434  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27025819 - 27025771
Alignment:
Q  47 atcaaagaaggaactgcatgatgctatacaatgtctctgcaagggatgt 95  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27025819 atcaaagaaggaactgcatgatgctatacaatgtctcggcaagggatgt 27025771  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 27025518 - 27025488
Alignment:
Q  314 ttaatctcaaatcaacaatgatatacaattt 344  Q
    |||||||||||||||||||||||||||||||    
T  27025518 ttaatctcaaatcaacaatgatatacaattt 27025488  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 27079689 - 27079725
Alignment:
Q  308 aatttcttaatctcaaatcaacaatgatatacaattt 344  Q
    ||||||||||||||||||||  |||||||||||||||    
T  27079689 aatttcttaatctcaaatcattaatgatatacaattt 27079725  T

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Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 30228291 - 30228123
Alignment:
Q  190 aattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacaca- 288  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||     
T  30228291 aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat 30228192  T
Q  289 -------------atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgatatacaattt 344  Q
                 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30228191 atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaaccaacaatgatatacaattt 30228123  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 30228475 - 30228414
Alignment:
Q  22 tacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaatgtctc 83  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  30228475 tacatataccaaaaagcgatcagtcatcaaagaaggaactgcatgatgctatacaatatctc 30228414  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 30228365 - 30228304
Alignment:
Q  95 tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaa 156  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  30228365 tttaaatcccaaatcagatgaaattactcggtgaagcacctgagttgttagattctttggaa 30228304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 30230656 - 30230600
Alignment:
Q  21 gtacatataccaaaaagcgataagtcatcaaagaaggaactgcatgatgctatacaa 77  Q
    |||||||||||||| || ||  |||||||||||||||||||||||||||||||||||    
T  30230656 gtacatataccaaagagtgaccagtcatcaaagaaggaactgcatgatgctatacaa 30230600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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