View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_22 (Length: 240)
Name: NF10879_low_22
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 5051131 - 5051342
Alignment:
| Q |
18 |
tatgaaaaataagaccgaacgttttaaacatcaacatcaacaaaaagtagaataaattgttattaattattaaaaaatttgttcttataagtgaatgtct |
117 |
Q |
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| T |
5051131 |
tatgaaaaataagaccgaaccttttaaacatcaacatcaacaaaaagtagaataaattgttattaattg-----------gttcttataagtgaatgtct |
5051219 |
T |
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| Q |
118 |
aaacactataagtttgatcatgtaccaaacaagattaactctgccaaacttatcatttcgaattgaaaaacaaaaagtgaataccaacatcatattggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5051220 |
aaacactataagtttgatcatgtaccaaacaagattaactctgccaaacttatcatttcgaattcaaaaacaaaaagtgaataccaacatcatattggaa |
5051319 |
T |
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| Q |
218 |
gctttattttatttcgacaacta |
240 |
Q |
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|||||||||||||||| |||||| |
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| T |
5051320 |
gctttattttatttcgccaacta |
5051342 |
T |
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