View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10879_low_27 (Length: 227)

Name: NF10879_low_27
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10879_low_27
NF10879_low_27
[»] chr4 (6 HSPs)
chr4 (1-91)||(31787733-31787823)
chr4 (88-171)||(31787850-31787932)
chr4 (90-161)||(50135183-50135254)
chr4 (55-86)||(28339935-28339966)
chr4 (55-86)||(44791189-44791220)
chr4 (55-86)||(50135288-50135319)
[»] chr6 (2 HSPs)
chr6 (88-171)||(17772207-17772290)
chr6 (4-91)||(17772317-17772399)
[»] chr3 (2 HSPs)
chr3 (88-171)||(41054065-41054148)
chr3 (4-91)||(41053956-41054038)
[»] chr8 (1 HSPs)
chr8 (91-169)||(9903884-9903962)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31787733 - 31787823
Alignment:
Q  1 ctgaatcactttccccttgcaataccaattcaagataaggtggccactacaacaaaagaagggtaaaagtggaaaagcaaaagagttgagg 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31787733 ctgaatcactttccccttgcaataccaattcaagataaggtggccactacaaagaaagaagggtaaaagtggaaaagcaaaagagttgagg 31787823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 31787850 - 31787932
Alignment:
Q  88 gaggagaagaagagtagccatgggatccacatatatttggtctctctctcctttttctctcctgttccaaactgtggaaatgtg 171  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31787850 gaggagaagaagagtagccatgggg-ccacatatatttggtctctctctcctttttctctgctgttccaaactgtggaaatgtg 31787932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 50135254 - 50135183
Alignment:
Q  90 ggagaagaagagtagccatgggatccacatatatttggtctctctctcctttttctctcctgttccaaactg 161  Q
    ||||||||||| |||  |||||  |||| ||||||||||||||||| | ||||||||| |||||||||||||    
T  50135254 ggagaagaagaatagttatggggcccacgtatatttggtctctctcccatttttctctgctgttccaaactg 50135183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 28339966 - 28339935
Alignment:
Q  55 aaagaagggtaaaagtggaaaagcaaaagagt 86  Q
    ||||||||||||||||||||||||||||||||    
T  28339966 aaagaagggtaaaagtggaaaagcaaaagagt 28339935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 44791220 - 44791189
Alignment:
Q  55 aaagaagggtaaaagtggaaaagcaaaagagt 86  Q
    ||||||||||||||||||||||||||||||||    
T  44791220 aaagaagggtaaaagtggaaaagcaaaagagt 44791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 50135319 - 50135288
Alignment:
Q  55 aaagaagggtaaaagtggaaaagcaaaagagt 86  Q
    ||||||||||||||||||||||||||||||||    
T  50135319 aaagaagggtaaaagtggaaaagcaaaagagt 50135288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 17772290 - 17772207
Alignment:
Q  88 gaggagaagaagagtagccatgggatccacatatatttggtctctctctcctttttctctcctgttccaaactgtggaaatgtg 171  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17772290 gaggagaagaggagtagccatggggcccacatatatttggtctctctctcctttttctctgctgttccaaactgtggaaatgtg 17772207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 17772399 - 17772317
Alignment:
Q  4 aatcactttccccttgcaataccaattcaagataaggtggccactacaacaaaagaagggtaaaagtggaaaagcaaaagagttgagg 91  Q
    ||||||||||||||||||||| |||||||||     |||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  17772399 aatcactttccccttgcaatatcaattcaag-----gtggccactacaaagaaagaagggtaaaagtggaaaagcaaaagagtggagg 17772317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 41054065 - 41054148
Alignment:
Q  88 gaggagaagaagagtagccatgggatccacatatatttggtctctctctcctttttctctcctgttccaaactgtggaaatgtg 171  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  41054065 gaggagaaaaagagtagccatggggcccacatatatttggtctctctcccctttttctctgctgttccaaactgtggaaatgtg 41054148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 41053956 - 41054038
Alignment:
Q  4 aatcactttccccttgcaataccaattcaagataaggtggccactacaacaaaagaagggtaaaagtggaaaagcaaaagagttgagg 91  Q
    ||||||||||||||||||||| |||||||||     |||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  41053956 aatcactttccccttgcaatatcaattcaag-----gtggccactacaaagaaagaagggtaaaagtggaaaagcaaaagagtggagg 41054038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 9903962 - 9903884
Alignment:
Q  91 gagaagaagagtagccatgggatccacatatatttggtctctctctcctttttctctcctgttccaaactgtggaaatg 169  Q
    ||||||||||  ||| ||||||  ||||||||||||||||||||| ||| ||||||| ||||||||||| || ||||||    
T  9903962 gagaagaagaaaagctatgggactcacatatatttggtctctctcacctatttctctgctgttccaaaccgtagaaatg 9903884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University