View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_28 (Length: 224)
Name: NF10879_low_28
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 5932532 - 5932726
Alignment:
| Q |
11 |
tgagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaat |
110 |
Q |
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| T |
5932532 |
tgagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaat |
5932631 |
T |
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| Q |
111 |
ggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcat |
205 |
Q |
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| T |
5932632 |
ggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggcttgcctgcttgtgtgaagaagttgggcat |
5932726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 5961432 - 5961609
Alignment:
| Q |
25 |
caaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttc |
124 |
Q |
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| T |
5961432 |
caaggaagaaaaaggaagttgttgatgaaaatgcacctttgttacctatgtgtcaagaaacagatgctgagtttcatgaattcaatggagcttcatttcc |
5961531 |
T |
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| Q |
125 |
tggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttggg |
202 |
Q |
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| T |
5961532 |
tggggctgttttcaatttgtccaccacagttattggtgctgggatcatgggcttgcccgcttgcgtcaaaaagttggg |
5961609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5982851 - 5983021
Alignment:
| Q |
20 |
gaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttca |
119 |
Q |
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| T |
5982851 |
gaaaacaaggaagaagaaggaagtggttgatggaaatgtacctttgttacctaaggcacaagaaacaaatgttgattatcatgaatttaatagagcttca |
5982950 |
T |
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| Q |
120 |
ttttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgt |
190 |
Q |
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| T |
5982951 |
ttttcaggagctgttttcaatttgtcaaccacagtcattggtgccggaatcatgggcttgcctgcttgtgt |
5983021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 5966929 - 5967116
Alignment:
| Q |
12 |
gagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatg |
111 |
Q |
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| T |
5966929 |
gagaagaaaaaatcaaggaagaacaagacaactattgatgtaaatgcacctttgttacctaagacacaggaaagtgatgttaagtttgatgaatttaatg |
5967028 |
T |
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| Q |
112 |
gagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagtt |
199 |
Q |
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| T |
5967029 |
gagcttcattttctggtgctgttttcaatttatcaaccacaattattggtgctggaattatgggattgcctgcatgtgtgaaaaagtt |
5967116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 5630486 - 5630410
Alignment:
| Q |
108 |
aatggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgc |
184 |
Q |
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| T |
5630486 |
aatggagcttcattttccggtgccgttttcaacttggcgactacgattattggtgctggaatcatggctttgcctgc |
5630410 |
T |
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