View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_29 (Length: 215)
Name: NF10879_low_29
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 56327227 - 56327412
Alignment:
| Q |
11 |
agcagagatagcaataggatctccaaaacctaaacgggacatttcattggcagcagaagcaagagagccatcaacatcaaagagggattcagatttattc |
110 |
Q |
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| T |
56327227 |
agcagaaatagcaataggatctccaaaccctaaacgggacatttcattggcagaagaagcaagagagccatcaacatcaaagagggattcagatttattc |
56327326 |
T |
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| Q |
111 |
ataacaagaataggtttaagttgaggtgcatttttgcgcaaccattttccaacttcctgatcaagaggatgaagaccagctctagc |
196 |
Q |
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| T |
56327327 |
ataacaagaataggtttaagttgaggtgcatttttgcgcaaccattttccaacttcctgatcaagaggatgaagaccagctctagc |
56327412 |
T |
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