View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10879_low_3 (Length: 376)
Name: NF10879_low_3
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 25153600 - 25153893
Alignment:
| Q |
18 |
cttattatacaccacagtcttcccctacgcgtggaaatggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaata |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25153600 |
cttattatacaccacagtcttcacctacgcgtggaaatggttgaagtgaagtgaaactaacaccatcaagagtgtgttattgaatgaaattaggtaaata |
25153699 |
T |
|
| Q |
118 |
agatgtattttatttttctcgtactaatttaggttagtattttcaagattgttttgttagatttagattaggcaatatagctctaatgtttgttagattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25153700 |
agatgtattttatttttctcgtactaatttaggttagtattttcaagattgttttgttagatttagattaggcaatatagctgtaatgtttgttagattt |
25153799 |
T |
|
| Q |
218 |
gtagtaaattgatctc------ctgggtggtcacttagttgaaagttttctcttcaacctcgagaaacttggtttgagatccgacacttagatt |
305 |
Q |
| |
|
||||||||| | |||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25153800 |
gtagtaaatcggtctcctgagtctgggtggtcatttagttgagagttttctcttcagcctcgagaaacttggttcgagatccgacacttagatt |
25153893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 25153892 - 25153933
Alignment:
| Q |
324 |
ttatattggtgtctctaagcacggtcaattatttgttttcat |
365 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25153892 |
ttatagtggtgtctctgagcacggtcaattatttgttttcat |
25153933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 6886598 - 6886654
Alignment:
| Q |
242 |
tcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgagatccgaca |
297 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
6886598 |
tcacttggttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccgaca |
6886654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 23431730 - 23431787
Alignment:
| Q |
241 |
gtcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgagatccgaca |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||| ||||||||| |||||| |
|
|
| T |
23431730 |
gtcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccgaca |
23431787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 14433844 - 14433893
Alignment:
| Q |
241 |
gtcacttagttgaaagttt-tctcttcaacctcgagaaacttggtttgag |
289 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
14433844 |
gtcacttggttgagagtttctctcttcaacctcgagaaactcggtttgag |
14433893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University