View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_4 (Length: 375)
Name: NF10879_low_4
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 31275131 - 31274782
Alignment:
| Q |
11 |
caaaggcaatgcagtgaaaacaatttttgtattatcatcagaattttctgggaataatttcttgcagagtttgttacaagaacaattaaaaatacaagtt |
110 |
Q |
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| T |
31275131 |
caaaggcaatggagtgaaaacaatttttgtattatcatcacaattttctgggaataatttcttgcagagtttgttacaagaacaattaaaaatacaagtt |
31275032 |
T |
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| Q |
111 |
gctgcagaatattagaaactaactgccaaaaaatatcctaacctctaagaattagagagtccaatttctacgaataggctgccaacaaaagattgttttt |
210 |
Q |
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| T |
31275031 |
gctgcagaatattagaaactaactgccaaaaaatatcctaacctctaagaattagagagtccaatttctacgaataggctgccaacaaaagattgttttt |
31274932 |
T |
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| Q |
211 |
tagtattgatattttacaatgtagacatgatttgtcttgtgttttctatttcaagcaacatgagaatctttaggcacttatttttgtacatgatttccat |
310 |
Q |
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| T |
31274931 |
tagtattgatattttacaatgtagacatgatttgtcttgtgttttctatttcaagcaacatgagaatctttaggcacttatttttgtacatgatttccat |
31274832 |
T |
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| Q |
311 |
ttcctatttggt-atttggacagctattcaatatgctttgatggggtatg |
359 |
Q |
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| T |
31274831 |
ttcctatttggtgttttggacagctattcaatatgctttgatggggtatg |
31274782 |
T |
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