View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_5 (Length: 363)
Name: NF10879_low_5
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 42634694 - 42634351
Alignment:
| Q |
1 |
aatattaaggacaacttaatcagattcaaggaatgtgattacggcaattggagacgatgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaa |
100 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42634694 |
aatattaaggagaacttaatcagattcatggaatgtgattacggcaattggagacgatgtatcgacatatttagaaacaattgtaaatgagtgcatcaaa |
42634595 |
T |
|
| Q |
101 |
cttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42634594 |
cttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagcaaaatttgctcttttatccaattcgg |
42634495 |
T |
|
| Q |
201 |
accttgtttggatcgaagaaactccatcctttttaatgaaattggtttcatttnnnnnnnnnnnnnnnttaacaatacaatagaaaactcaacttcttcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42634494 |
accttgtttggatcgaagaaactccatcctttttaatgaaattggtttcatttaaaaaaaataaaaaattaacaatacaatagaaaactcaacttcttca |
42634395 |
T |
|
| Q |
301 |
aaaaatatttgttttccattccattaactaccacattgccattt |
344 |
Q |
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| T |
42634394 |
aaaaatatatgttttccattccattaactaacacattgccattt |
42634351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 25518369 - 25518169
Alignment:
| Q |
20 |
tcagattcaaggaatgtgattacggcaattggagacga------tgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagct |
113 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||| || ||||||| || |||||||||||||||||||||||| |||| ||||| |
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| T |
25518369 |
tcagattcaaggaatgtgattacggcaattgaagacgagtttcatgtatcaacctatttaggaacaattgtaaatgagtgcatcaaactaagtcctagct |
25518270 |
T |
|
| Q |
114 |
ttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
213 |
Q |
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||||||| ||||| |||||||||||||| || ||||||||| | ||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
25518269 |
ttaattcaattagctttgctcatgttaggcgtgtggctaaccaagctgcgcattacttagcaaaatttgctctttcatccaattcggactttgtttggat |
25518170 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
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| |
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|
| T |
25518169 |
c |
25518169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 37433058 - 37433273
Alignment:
| Q |
18 |
aatcagattcaaggaatgtgattacggcaattggagacga------tgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttag |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| ||||| ||| ||||||| || |||||||||||| |||||||| | |||| || |
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| T |
37433058 |
aatcagattcaaggaatgtgattacggtgattgaagacgagtttcatgtattgacctatttaggaacaattgtaaatgaatgcatcaat-taagtcctaa |
37433156 |
T |
|
| Q |
112 |
ctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgg |
211 |
Q |
| |
|
|||||| | |||||| ||||||| |||||| || ||||||||| | | || |||||||||| |||||||||||||| |||||||| ||| |||| ||| |
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| T |
37433157 |
ctttaactatattagctttgctcgtgttaggcgtgtggctaaccaagttgtgcattacttagcaaaatttgctctttcttccaattcagactttgtatgg |
37433256 |
T |
|
| Q |
212 |
atcgaagaaactccatc |
228 |
Q |
| |
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||||||||||| ||||| |
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| T |
37433257 |
atcgaagaaaccccatc |
37433273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 31617004 - 31617054
Alignment:
| Q |
57 |
atgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtc |
107 |
Q |
| |
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|||||| ||| |||||||||| ||||||||||||||| |||||||| |||| |
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| T |
31617004 |
atgtattgacctatttagaaacaattgtaaatgagtgtatcaaactaagtc |
31617054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 31617071 - 31617120
Alignment:
| Q |
164 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
213 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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|
| T |
31617071 |
cattacttagcaaaattttatctttcatccaattcggacctagtttggat |
31617120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 7184976 - 7184768
Alignment:
| Q |
18 |
aatcagattcaaggaatgtgattacggcaattggagacgatgtatcgacatatttagaaaaaattgtaaatgagtgcatcaaacttagtcttagctttaa |
117 |
Q |
| |
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||||| ||||||||||||||||||| ||||||| |||| | | || | ||||||| || ||||||||||||| ||||||||| |||| ||||||||| |
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| T |
7184976 |
aatcaaattcaaggaatgtgattactgcaattgaagacaagct-tc-atgtatttaggaacaattgtaaatgagggcatcaaaccaagtcctagctttaa |
7184879 |
T |
|
| Q |
118 |
ttctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaa |
217 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| | | ||| |||||| ||| ||||||| |||||| | | |||| | || ||||||||||||| |
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| T |
7184878 |
ctctattagttttgctcatgttaggcgtgtggctaaccaagttgcgcattacctagcaaaattttctctttcacctaatttgaactctgtttggatcgaa |
7184779 |
T |
|
| Q |
218 |
gaaactccatc |
228 |
Q |
| |
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||||||||||| |
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| T |
7184778 |
gaaactccatc |
7184768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 30941983 - 30941892
Alignment:
| Q |
81 |
ttgtaaatgagtgcatcaaacttagtcttagctttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattactta |
172 |
Q |
| |
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||||||| ||||| |||||||| | | |||||||||||||||||| ||||||||| ||||||| || |||||| | ||||||||||||||| |
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| T |
30941983 |
ttgtaaacgagtgtatcaaactaaattctagctttaattctattagctttgctcatattagacgtgtagctaaccaagctgcacattactta |
30941892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 20589198 - 20589313
Alignment:
| Q |
113 |
tttaattctattagttttgctcatgttagacgcgtggctaactatgctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttgga |
212 |
Q |
| |
|
||||||| |||||| ||| |||||||||| | ||||||||| | |||| ||||| |||| || ||||||||||| ||||||||| || || |||||| |
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| T |
20589198 |
tttaattttattagctttactcatgttaggtgtgtggctaaccaagctgagcattatttagcaatatttgctctttcatccaattcaaactttttttgga |
20589297 |
T |
|
| Q |
213 |
tcgaagaaactccatc |
228 |
Q |
| |
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|||||| ||||||||| |
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| T |
20589298 |
tcgaagtaactccatc |
20589313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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