View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10879_low_7 (Length: 358)
Name: NF10879_low_7
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 35250028 - 35249693
Alignment:
| Q |
18 |
gaattattgagcaatctgcttacaacatatatataaagtttagattatcaataattaccttttacatttgtcttagtcttctaattttgtttgagtgaga |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35250028 |
gaattattgagcaatttgcttacaacatatatatagagtttagattatcaattattaccttttacatttgtcttagtcttctaattttgtttgagtgaga |
35249929 |
T |
|
| Q |
118 |
aactaagtaggttatttgcataaacagaataaatcaagttttggtagcagaaattgatgataagttccacctttgaatgttttagcgacaaaatacataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35249928 |
aactaagtaggttatttgcataaacagaataaatcaagttttggtaacagaaattgatgataagttccacctttgaatgttttagcgacaaaatacataa |
35249829 |
T |
|
| Q |
218 |
tggattagaatcttttgctatgtgtaattctttgtagtgtatttattacaaagccttgtgactaaaagctaaaacacaaaagttgcatgaaggaagggga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35249828 |
tggattagaatcttttgctatgtgtaattctttgtagtgtatttattacaaagccttgtgactaaaagctaaaacacaaaagttgcatgaaggaagggga |
35249729 |
T |
|
| Q |
318 |
ttttgtctattgttcctgagaattccctttgcttct |
353 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35249728 |
ttttgtctattgttcctgagaattctctatgcttct |
35249693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 7229589 - 7229649
Alignment:
| Q |
156 |
ttttggtagcagaaattgatgataagttccacctttgaatgttttagcgacaaaatacata |
216 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7229589 |
ttttggttgcagaaattgttgacgagttccacctttgaatgttttcaggacaaaatacata |
7229649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 7321514 - 7321478
Alignment:
| Q |
306 |
gaaggaaggggattttgtctattgttcctgagaattc |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7321514 |
gaaggaaggggattttgtctattgatcctgagaattc |
7321478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 38226879 - 38226762
Alignment:
| Q |
18 |
gaattattgagcaatctgcttacaacatatatataaagtttagattatcaataattaccttttacatttgtcttagtcttctaattttgtttgagtgaga |
117 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38226879 |
gaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttacaccttttacatttgtcttaatcttctaattttgtttgagt--ta |
38226782 |
T |
|
| Q |
118 |
aactaagtaggttatttgca |
137 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
38226781 |
aactaactaggttatttgca |
38226762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 27782189 - 27782092
Alignment:
| Q |
18 |
gaattattgagcaatctgcttacaacatatatataaagtttagattatcaataattaccttttacatttgtcttagtcttctaattttgtttgagtga |
115 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27782189 |
gaattattgagcaattcgcttacaagatatatataaagtttagtttatcaatttccaccttttacatttgtcttaatcttctagttttgtttgagtga |
27782092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 27777770 - 27777867
Alignment:
| Q |
18 |
gaattattgagcaatctgcttacaacatatatataaagtttagattatcaataattaccttttacatttgtcttagtcttctaattttgtttgagtga |
115 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
27777770 |
gaattattgagcaatttgcttacaagatatatataaagtttagtttatcaatttccatcttttacatttgtcttaatcttcttgttttgtttgagtga |
27777867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University