View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10879_low_9 (Length: 329)
Name: NF10879_low_9
Description: NF10879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10879_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 77 - 321
Target Start/End: Original strand, 49637185 - 49637429
Alignment:
| Q |
77 |
caaccttagagagatgctgagcaggaacagaaggtgtaattgattccaaaaaccgttccaaattactcaaccgcttaacctccggttcacacgacggaac |
176 |
Q |
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| T |
49637185 |
caaccttagagagatgctgagcaggaacagaaggtgtaattgattccaaaaaccgttccaaattactcaaccgcttaacctccggttcacacgacggaac |
49637284 |
T |
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| Q |
177 |
tgcaactactttcttggtctcttcagacccaacccggttctctaatttcttctcaaccgaatccaccgatttttctcttaccaccgacgacgaccgactc |
276 |
Q |
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| T |
49637285 |
tgcaactactttcttggtctcttcagacccaacccggttctctaatttcttctcaaccgaatccaccgatttttctcttaccgccgacgacgaccgactc |
49637384 |
T |
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| Q |
277 |
ggcgtaacatcgctgtgagctctacgaattctatcattctctgct |
321 |
Q |
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| T |
49637385 |
ggcgtaacatcgctgtgagctctacgaattctatcattctctgct |
49637429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 49637126 - 49637163
Alignment:
| Q |
18 |
aaaggaaacctatgaataaaacagctagctcaagtaac |
55 |
Q |
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| T |
49637126 |
aaaggaaacctatgaataaaacagctagctcaagtaac |
49637163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 53434823 - 53434865
Alignment:
| Q |
264 |
cgacgaccgactcggcgtaacatcgctgtgagctctacgaatt |
306 |
Q |
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| T |
53434823 |
cgacgacggactcggcataacatcgttgtgagctctacgaatt |
53434865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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