View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1087_high_3 (Length: 257)
Name: NF1087_high_3
Description: NF1087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1087_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7916532 - 7916304
Alignment:
| Q |
1 |
tataatgtataattaatattattttttcttcacattgtgtgctaaatgctatnnnnnnnnnn-tcgctagagtagagtttaattatcattacaagattat |
99 |
Q |
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| T |
7916532 |
tataatgtatagttaatattattttttcttcacattgtgtgctaaatgttataaaaaaaaaagtagctagagtagagtttaattatcattacaagattat |
7916433 |
T |
|
| Q |
100 |
aatcagctgattaaataatgatttcaactatagataatgacggcccttgagggtcacattggtagggttgagagggggctgacagaggaggaaattctca |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7916432 |
aatcagctgattaaataatgaattcaactatagataatgacggcccttgagggtcacattggtagggttgagagggggctgacagaggaggaaattctca |
7916333 |
T |
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| Q |
200 |
ggagcatccatgaagagacttaccagttt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7916332 |
ggagcatccatgaagagacttaccagttt |
7916304 |
T |
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