View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1087_low_1 (Length: 477)
Name: NF1087_low_1
Description: NF1087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1087_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 32150974 - 32150609
Alignment:
| Q |
13 |
aatatatgattcaaagatttagcatgaaagtaatatggcaagtttgatcggtgtcattaggattcaatgtattcatgtgaatttagcaacacccataaga |
112 |
Q |
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| T |
32150974 |
aatatatgattcaaagatttagcatgaaagtaatatggcaagtttgatcggtgtcattaggattcaatgtattcatgtgaatttagcaacacccataaga |
32150875 |
T |
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| Q |
113 |
ataagaatgatcaaaaccataaatcctataataacagcaaacacggtgacacacatatcaaaattgataatgtcttgttaccaaaacaaatattgttacc |
212 |
Q |
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| T |
32150874 |
at------gatcaaaaccataaatcctataataacagcaaacacggtgacacacatatcaaaattgataatgtcttgttaccaaaacaaatattgttacc |
32150781 |
T |
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| Q |
213 |
aaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatg----gtaagtgtccgttaactgnnnnnnngagtttgagttttatggaggacagg |
308 |
Q |
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| T |
32150780 |
aaaaaattattgactgtcagactaaaaa-aaagaggaagaaaaatggtaagtaagtgtccgttaactgaaaaaaagagtttgagttttatggaggacagg |
32150682 |
T |
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| Q |
309 |
taaatgcactaaacaccnnnnnnnnttgctaagtaatattactttacaacactcaccatccccatcttgcatc |
381 |
Q |
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| T |
32150681 |
taaatgcactaaacaccaaaaaaaaatgctaagtaatattactttacaacactcaccatccccatcttgcatc |
32150609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 7104816 - 7104678
Alignment:
| Q |
181 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatggtaagtgtccgttaactg-nnn |
279 |
Q |
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| T |
7104816 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgaatgtcacacctaaaa-aaagaggatgaa-------aagtgtccgttaactgaaaa |
7104725 |
T |
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| Q |
280 |
nnnngagtttgagttttatgga-ggacaggtaaatgcactaaacacc |
325 |
Q |
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| T |
7104724 |
aagtgagttcgagtattatggagggacaggtaaatgcactaaacacc |
7104678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 325
Target Start/End: Original strand, 8789814 - 8789952
Alignment:
| Q |
181 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgactgtcagactaaaaagaaagaggaagaaaaatggtaagtgtccgttaactg-nnn |
279 |
Q |
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| T |
8789814 |
aatgtcttgttaccaaaacaaatattgttaccaaaaaattattgaatgtcacacctaaaa-aaagaggatgaa-------aagtgtccgttaactgaaaa |
8789905 |
T |
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| Q |
280 |
nnnngagtttgagttttatgga-ggacaggtaaatgcactaaacacc |
325 |
Q |
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| T |
8789906 |
aagtgagttcgagtattatggagggacaggtaaatgcactaaacacc |
8789952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 7110168 - 7110129
Alignment:
| Q |
284 |
gagtttgagttttatggaggacaggtaaatgcactaaaca |
323 |
Q |
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| T |
7110168 |
gagtttgagtcttatggaagacaggtaaatgcactaaaca |
7110129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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