View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1087_low_3 (Length: 355)
Name: NF1087_low_3
Description: NF1087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1087_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 38005052 - 38004811
Alignment:
| Q |
102 |
catgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttcaaag |
201 |
Q |
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| T |
38005052 |
catgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttcaaag |
38004953 |
T |
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| Q |
202 |
tttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttcttat |
301 |
Q |
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| T |
38004952 |
tttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttcttat |
38004853 |
T |
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| Q |
302 |
cagacgttatcatcattccgtaagatttcatgtgttcctctc |
343 |
Q |
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| T |
38004852 |
cagacgttatcatcattccgtaagatttcttgtgttcctctc |
38004811 |
T |
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