View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1087_low_8 (Length: 203)

Name: NF1087_low_8
Description: NF1087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1087_low_8
NF1087_low_8
[»] chr4 (59 HSPs)
chr4 (1-172)||(27524519-27524690)
chr4 (8-172)||(27503924-27504088)
chr4 (2-172)||(27508848-27509018)
chr4 (2-172)||(27475553-27475723)
chr4 (2-170)||(27468303-27468471)
chr4 (2-170)||(27514887-27515055)
chr4 (3-172)||(27420405-27420574)
chr4 (3-171)||(27570024-27570192)
chr4 (48-171)||(27412706-27412829)
chr4 (48-171)||(27415663-27415786)
chr4 (2-163)||(27489956-27490117)
chr4 (48-172)||(27423264-27423388)
chr4 (2-172)||(27478857-27479027)
chr4 (48-168)||(27425854-27425974)
chr4 (47-172)||(27563320-27563445)
chr4 (2-165)||(27485924-27486087)
chr4 (2-164)||(27497304-27497466)
chr4 (47-172)||(27585729-27585854)
chr4 (2-172)||(27506694-27506864)
chr4 (5-146)||(27526112-27526253)
chr4 (3-172)||(27565925-27566094)
chr4 (5-146)||(27505702-27505843)
chr4 (42-146)||(27479937-27480041)
chr4 (5-146)||(27424514-27424655)
chr4 (50-156)||(17970343-17970449)
chr4 (48-146)||(27431148-27431246)
chr4 (42-155)||(27414295-27414408)
chr4 (5-146)||(27523403-27523544)
chr4 (59-172)||(27527214-27527323)
chr4 (50-144)||(27502809-27502903)
chr4 (50-156)||(27557533-27557639)
chr4 (5-146)||(27411456-27411597)
chr4 (5-146)||(27486982-27487123)
chr4 (48-145)||(27498457-27498554)
chr4 (5-145)||(27571622-27571762)
chr4 (5-155)||(27419062-27419212)
chr4 (48-146)||(27444794-27444892)
chr4 (5-155)||(27567254-27567404)
chr4 (5-146)||(27476686-27476827)
chr4 (5-146)||(27513776-27513917)
chr4 (98-155)||(27559231-27559288)
chr4 (61-144)||(27554364-27554447)
chr4 (56-155)||(27556370-27556469)
chr4 (48-146)||(27516609-27516707)
chr4 (2-154)||(27540003-27540155)
chr4 (90-146)||(27495620-27495676)
chr4 (48-144)||(27501359-27501455)
chr4 (74-146)||(27502135-27502207)
chr4 (48-146)||(27460520-27460618)
chr4 (5-146)||(27469459-27469600)
chr4 (48-145)||(27473934-27474031)
chr4 (5-154)||(27421923-27422076)
chr4 (56-156)||(27446197-27446297)
chr4 (48-146)||(27500338-27500436)
chr4 (109-162)||(27437237-27437290)
chr4 (94-146)||(27466909-27466961)
chr4 (50-85)||(27945687-27945722)
chr4 (50-144)||(27507815-27507909)
chr4 (119-171)||(27548971-27549023)
[»] chr5 (4 HSPs)
chr5 (3-168)||(1756735-1756900)
chr5 (48-172)||(1754730-1754854)
chr5 (47-144)||(1754243-1754340)
chr5 (17-146)||(1759259-1759392)
[»] chr3 (14 HSPs)
chr3 (50-160)||(50910004-50910114)
chr3 (3-156)||(55084783-55084936)
chr3 (56-146)||(50904792-50904882)
chr3 (50-152)||(50911863-50911965)
chr3 (50-153)||(38024868-38024971)
chr3 (50-153)||(38028759-38028862)
chr3 (50-153)||(38031320-38031423)
chr3 (50-152)||(38043947-38044049)
chr3 (51-156)||(48840702-48840806)
chr3 (50-153)||(38040074-38040177)
chr3 (51-147)||(38036792-38036888)
chr3 (50-123)||(38033802-38033875)
chr3 (59-146)||(55088051-55088138)
chr3 (3-160)||(50913493-50913650)
[»] chr2 (1 HSPs)
chr2 (50-156)||(3073613-3073719)
[»] chr8 (3 HSPs)
chr8 (50-154)||(21607288-21607392)
chr8 (50-153)||(21604747-21604850)
chr8 (66-156)||(21634603-21634693)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 27524519 - 27524690
Alignment:
Q  1 cgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27524519 cgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaa 27524618  T
Q  101 gagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  27524619 gagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccgaagatgtcttccaacatataact 27524690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 27503924 - 27504088
Alignment:
Q  8 gtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttg 107  Q
    |||||||||||||||||| || |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  27503924 gtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttg 27504023  T
Q  108 gatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27504024 gatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataact 27504088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 27508848 - 27509018
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27508848 gttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaag 27508947  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| |||||||||||||||    
T  27508948 agtttggatatgatcatccaacgggtggcctcaccattccatgctccgaagatgtgttccaacatataact 27509018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 27475723 - 27475553
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    ||||| |||||||||||||||||| || |||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |||||||    
T  27475723 gttgccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaag 27475624  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  27475623 agtttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtcttccaacatataact 27475553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 170
Target Start/End: Complemental strand, 27468471 - 27468303
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    ||||| |||||||||||||||||||||  ||||||  |||| ||||||||||| || |||||||||||||||||||||||||||| |||| | |||||||    
T  27468471 gttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaag 27468372  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataa 170  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27468371 aatttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtcttccaacatataa 27468303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 27514887 - 27515055
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    ||||| |||||||||||||||||||||  ||||||  |||| ||||||||||| ||||| ||||||||||||||||||||||||| |||| | |||||||    
T  27514887 gttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaag 27514986  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataa 170  Q
    | ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||    
T  27514987 aatttggatatgatcatcccatgggtggcctcaccattccttgtacagaagatgtcttccagcatataa 27515055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 27420405 - 27420574
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    ||||||| |||||||||||||||| ||||||||   || | || |||||||| |||| ||||||||||||||||| |||| ||| ||||| |||||||||    
T  27420405 ttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaaga 27420504  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  27420505 gtttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataact 27420574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 27570192 - 27570024
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    ||||||| |||||||||||||||| ||||||||   |  | || |||||||| || | |||||||||||||||||||||| ||| |||||||||||||||    
T  27570192 ttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaaga 27570093  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataac 171  Q
    ||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  27570092 gttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataac 27570024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 27412706 - 27412829
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    ||||||| ||||||||||| | |||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412706 tatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 27412805  T
Q  148 tgaagatgtcttccaacatataac 171  Q
     ||||||||||| |||||||||||    
T  27412806 ggaagatgtctttcaacatataac 27412829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 27415663 - 27415786
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    ||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  27415663 tatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcac 27415762  T
Q  148 tgaagatgtcttccaacatataac 171  Q
     ||||||||||| ||||| |||||    
T  27415763 agaagatgtctttcaacacataac 27415786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 27489956 - 27490117
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    |||| ||||||||||||||||||||  |  |||||  |||| ||||| ||||| || ||| |||| ||||||||||| |||||||||||||| |||||||    
T  27489956 gttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaag 27490055  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaa 163  Q
    |||||||||||||||||||||||||||||||||||||||||  ||  ||||||| |||||||    
T  27490056 agtttggatatgatcatccaatgggtggcctcaccattcctgtcaacgaagatgacttccaa 27490117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 27423264 - 27423388
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    ||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||  ||||||| ||||||||||||||| ||||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 27423363  T
Q  148 tgaagatgtcttccaacatataact 172  Q
     |||||||| |||||||||||||||    
T  27423364 ggaagatgttttccaacatataact 27423388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 27479027 - 27478857
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    ||||||||||||||||||||||||| || ||||||  | || ||  ||||||| ||||||||||| |  |||||||| ||| |  ||||||| || ||||    
T  27479027 gttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaag 27478928  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    | ||||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  27478927 aatttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataact 27478857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 27425854 - 27425974
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    ||||||| ||||||||||| |||||||||||||| |||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27425854 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcac 27425953  T
Q  148 tgaagatgtcttccaacatat 168  Q
     || ||||| || ||||||||    
T  27425954 cgaggatgtatttcaacatat 27425974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 27563445 - 27563320
Alignment:
Q  47 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    |||||||| ||||||||| | |  |||||||| ||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27563445 gtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgca 27563346  T
Q  147 ctgaagatgtcttccaacatataact 172  Q
    ||||||||| ||| ||||||||||||    
T  27563345 ctgaagatgcctttcaacatataact 27563320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 27486087 - 27485924
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    ||||||||||||||||||||||||| || ||||||  | || ||  ||||||| ||||||||||| |  |||||||| ||| |  ||||||| || ||||    
T  27486087 gttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaag 27485988  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaaca 165  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||    
T  27485987 aatttggatatgatcatcccatgggtggcctcaccattccttgcactgaaggcgtctttcaaca 27485924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 27497466 - 27497304
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    |||||||||||||||||||| ||||  | ||||||  |  | ||| | ||||| || |||||||| |  |||||| | ||||||| ||||||||||||||    
T  27497466 gttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaag 27497367  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaac 164  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  27497366 agtttggatatgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaac 27497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 27585729 - 27585854
Alignment:
Q  47 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    |||||||| ||||||||||| |  |||||||| ||| ||| |||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  27585729 gtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgca 27585828  T
Q  147 ctgaagatgtcttccaacatataact 172  Q
    | ||||||| |||| |||||||||||    
T  27585829 cagaagatgccttcaaacatataact 27585854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 27506694 - 27506864
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaag 101  Q
    |||||||| ||||| |||||||||| |||||||||  |  | ||  ||||||| || |||||||| |  |||||||| ||| |  ||||||| || ||||    
T  27506694 gttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaag 27506793  T
Q  102 agtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  27506794 aatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataact 27506864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27526253 - 27526112
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||||||||||||||||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| ||||| |||||||  |||||||||||| | |    
T  27526253 gcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaat 27526154  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| |||||||||||||| |||||| ||||| ||||||||||    
T  27526153 ttgaatatgatcatccaacgggtggtctcactattccttgca 27526112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 27566094 - 27565925
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    ||||||||||||||||||||||||  | ||| ||  |  | ||  |||||||  |||||||||| |  |||||||||||| |||  |||| |||||||||    
T  27566094 ttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaaga 27565995  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataact 172  Q
    |  |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  27565994 gcatggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataact 27565925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27505843 - 27505702
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    |||||||| || ||||||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| ||||| |||||||| |||||||||||| | |    
T  27505843 gcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaat 27505744  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| |||||| |||||||||||||| ||||| ||||||||||    
T  27505743 ttgaatatgaccatccaatgggtggtctcactattccttgca 27505702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 27479937 - 27480041
Alignment:
Q  42 ttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 141  Q
    ||||||||||||| ||||||||| | ||||| ||| | |||||||| |||||||||||| | |||| ||||||||||||||||||||| |||||||||||    
T  27479937 ttcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattcc 27480036  T
Q  142 ttgca 146  Q
    |||||    
T  27480037 ttgca 27480041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27424655 - 27424514
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| |||||||||||  || ||| ||||||  |  |||| |||||||| ||||||||||||||||||||||| ||| | |||||| |||| ||||| |    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
     |||||||||||||||||||||||| || |||||||| ||||    
T  27424555 atggatatgatcatccaatgggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 17970343 - 17970449
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| ||||| ||| ||  || |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |    
T  17970343 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacag 17970442  T
Q  150 aagatgt 156  Q
    |||||||    
T  17970443 aagatgt 17970449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 27431246 - 27431148
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| | ||||||||||| |||||||  ||||| ||||| ||||||||||    
T  27431246 tatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgca 27431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 27414408 - 27414295
Alignment:
Q  42 ttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 141  Q
    ||||||||||||| ||||||||||| ||||||||||| ||  | |||||| | || ||||| |||||||||||||||||||||||||| || || |||||    
T  27414408 ttcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattcc 27414309  T
Q  142 ttgcactgaagatg 155  Q
     |||| ||||||||    
T  27414308 gtgcagtgaagatg 27414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27523544 - 27523403
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    |||||||| || ||||||||| ||| ||||||  |  ||||||||||||||||||||||| ||||||| ||||| |||||||   |||| |||||| | |    
T  27523544 gcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaat 27523445  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| |||||| |||||||||||||| || || ||||||||||    
T  27523444 ttgaatatgaccatccaatgggtggtctaactattccttgca 27523403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 27527214 - 27527323
Alignment:
Q  59 aaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtct 158  Q
    |||||||| || |||| ||| ||| ||| ||||||||||||||||||||||||||||||||| |||||     || | |||||||||| |||||||||||    
T  27527214 aaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggatatgatcatcccatggg----atcccaattccttgcagtgaagatgtct 27527309  T
Q  159 tccaacatataact 172  Q
    ||||||||||||||    
T  27527310 tccaacatataact 27527323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 27502903 - 27502809
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttg 144  Q
    ||||||||||| ||| ||||||||||||||||| |||  ||||||| |||||| ||||||||||| |||||||||||||| || || ||||||||    
T  27502903 tcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 27557533 - 27557639
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| || |||||||| ||||||||||| ||| ||||||||||||||||| | |||| ||||| ||||||||||||||| ||||| ||||| ||||  |    
T  27557533 tcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagag 27557632  T
Q  150 aagatgt 156  Q
    |||||||    
T  27557633 aagatgt 27557639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27411597 - 27411456
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| ||||||||||| | | |||  |||||| |  |||| |||||||| ||||||||||| || |||||||| ||  | |||||||| || ||||| |    
T  27411597 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaat 27411498  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    |||||||||||||||| |||||||| ||||| ||||||||||    
T  27411497 ttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 27486982 - 27487123
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    |||||||| || ||||||||| ||| ||||||  |  | ||| ||||||| || |||||||| || |||||||| |||||||| |||||||| ||| | |    
T  27486982 gcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaat 27487081  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| ||||||||||||||||||||| || || ||||||||||    
T  27487082 ttgaatatgatcatccaatgggtggtcttactattccttgca 27487123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 27498457 - 27498554
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 145  Q
    ||||||| ||||||||||| || || |||||||||||||| ||||| |||||| | || | ||||||||||||||||||||| ||||| |||||||||    
T  27498457 tatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 27571622 - 27571762
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| ||||||||||| | | ||| ||||||| |  |||| ||||||||||||| ||| || || |||||||| ||  | |||||| | || ||||| |    
T  27571622 gcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaat 27571721  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgc 145  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  27571722 ttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 27419212 - 27419062
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| ||||||||||| | | ||| ||||||| |  |||| ||||||||||||| ||| || || |||||||| ||  | |||||| | || ||||| |    
T  27419212 gcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaat 27419113  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatg 155  Q
    ||||||||||||||||||||||||| || || |||||||||  ||||||||    
T  27419112 ttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatg 27419062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 27444892 - 27444794
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||| | || |||||||| |||||||||||||| ||||| ||||||||||    
T  27444892 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 27444794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 27567254 - 27567404
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| ||||||||||| | | |||  |||||| |  |||| |||||||| ||||||||||| || |||||||| ||  | |||||| | || ||||| |    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatg 155  Q
    |||| |||||||||||||||||||| ||||| ||||||||||  |||||||    
T  27567354 ttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatg 27567404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 27476686 - 27476827
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    |||||||||||||| |||||| ||| ||||||  |  ||||||||||||| ||||||||| | ||||| |||||  || |||  |||  ||||||| | |    
T  27476686 gcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaat 27476785  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| ||||||||||||||||||||| || || ||||||||||    
T  27476786 ttgaatatgatcatccaatgggtggtctaactattccttgca 27476827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 27513917 - 27513776
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||||||||| ||||||||| ||| ||||||  |  | ||  ||||||| ||||||||| | || || ||||| |||||||| |||||||| ||| | |    
T  27513917 gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaat 27513818  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
     || ||||||||||||||||||||| ||||| ||||||||||    
T  27513817 atgaatatgatcatccaatgggtggtctcactattccttgca 27513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 27559288 - 27559231
Alignment:
Q  98 gaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatg 155  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  27559288 gaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatg 27559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 27554364 - 27554447
Alignment:
Q  61 ccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttg 144  Q
    |||||| || |||||||| ||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||||| ||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 155
Target Start/End: Complemental strand, 27556469 - 27556370
Alignment:
Q  56 ttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatg 155  Q
    ||||||||||||||||||||||| ||  |  ||||||| || ||||| ||||||||||||||| | |||||||| ||||| ||||| |||| ||||||||    
T  27556469 ttgaaccaaccttcatttcaagaattactacatcaagcagaagaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatg 27556370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 27516707 - 27516609
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||||||||| |||   ||||| ||||| |||||||| |||||||||||| | |||| |||||| ||||||||||| || ||||| ||||||||||    
T  27516707 tatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgca 27516609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 27540003 - 27540155
Alignment:
Q  2 gttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaag-ctgaggaa 100  Q
    |||||||||||||||||||| ||  ||| ||||||| |  ||||| |   ||  ||||| ||||||||||||||||||||| | || |||| | ||||||    
T  27540003 gttgcagtgtatgttggagaaaatatgaagcggttcgtgattcctattggatgcttgaatcaaccttcatttcaagacttgct-aagcaaggcagaggaa 27540101  T
Q  101 gagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagat 154  Q
    || ||||| ||  |||||||||||||||| || ||||||||||||| |||||||    
T  27540102 gaatttgggtaccatcatccaatgggtggactaaccattccttgcagtgaagat 27540155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 27495620 - 27495676
Alignment:
Q  90 aagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  27495620 aagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgca 27495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 27501359 - 27501455
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttg 144  Q
    ||||||| || |||||||| |  ||||||||||||||||| ||||| |||||| | |||| ||| |||||||||| |||||| ||||| ||||||||    
T  27501359 tatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 27502207 - 27502135
Alignment:
Q  74 caagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||| |||||||| |||||||||||| | |||| ||||||||||||||||||||| || || ||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgca 27502135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 27460520 - 27460618
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||||||||| |||   ||||| ||||| ||| |||  |||  ||||||| | |||| ||||||||||||||||||||| ||||||||||||||||    
T  27460520 tatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgca 27460618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 27469459 - 27469600
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    |||||||| || ||||||||| ||| ||||||  |  | ||| ||||||||||||| ||| | ||||| |||||  ||||||  |||||||| ||| | |    
T  27469459 gcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaat 27469558  T
Q  105 ttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||| |||||| |||||||||||||| || || ||||||||||    
T  27469559 ttgaatatgaacatccaatgggtggtctaactattccttgca 27469600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 27473934 - 27474031
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgc 145  Q
    ||||||||||||| |||   ||||| ||||| ||| |||  |||  ||||||| | |||| ||||||||||||||||||||| |||||||||||||||    
T  27473934 tatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgc 27474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 27422076 - 27421923
Alignment:
Q  5 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 104  Q
    ||||| ||||||||||| | | |||  |||||| |  |||| |||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| |    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  105 t----tggatatgatcatccaatgggtggcctcaccattccttgcactgaagat 154  Q
    |    |||||| |||||||||| |||||| ||||| |||||||||| |||||||    
T  27421976 ttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaagat 27421923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 27446197 - 27446297
Alignment:
Q  56 ttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatg 155  Q
    ||||| ||||||||||||||||| | ||| |  ||| | || |||||||||| ||||||||||| ||||| ||| ||| | |||||||||| ||||||||    
T  27446197 ttgaatcaaccttcatttcaagagtcgttaagccaatcagaagaagagtttgaatatgatcatcgaatggatggtctctcgattccttgcagtgaagatg 27446296  T
Q  156 t 156  Q
    |    
T  27446297 t 27446297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 27500436 - 27500338
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||| || ||||||  |||||| ||||| ||| |||  ||| |||| ||| |||| |||||||| ||||||||||||||| |||| ||||||||||    
T  27500436 tatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgca 27500338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 27437237 - 27437290
Alignment:
Q  109 atatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttcca 162  Q
    ||||||||||||||||| ||||||  | ||||||||||| ||||||||||||||    
T  27437237 atatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttcca 27437290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 27466909 - 27466961
Alignment:
Q  94 tgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||| | |||| ||||||||||||||||||||| ||||| ||||||||||    
T  27466909 tgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgca 27466961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 27945687 - 27945722
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttg 85  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27945687 tcatacttgaaccaaccttcatttcaagacttgttg 27945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 27507909 - 27507815
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttg 144  Q
    ||||||||||| ||| ||||| ||||||| ||| | |  || ||||  ||||| ||||||||||| |||||||||||||| || || ||||||||    
T  27507909 tcatatttgaatcaaacttcacttcaagagttgctcagccaggctgtcgaagaatttggatatgaccatccaatgggtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 27549023 - 27548971
Alignment:
Q  119 ccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatataac 171  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||| || |||||    
T  27549023 ccaatggttggcctcactatttcttgcaccgaagatgtcttccagcacataac 27548971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 6e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 1756900 - 1756735
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    |||||||| ||||||||||||||| || ||||||  |  | ||  ||||||| ||||||||||| || |||||| ||||||||| ||||||||| |||||    
T  1756900 ttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaaga 1756801  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttccaacatat 168  Q
     |||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  1756800 atttggatatgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatat 1756735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 1754730 - 1754854
Alignment:
Q  48 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    ||||||| ||||| ||||| || ||||||  |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1754730 tatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcac 1754829  T
Q  148 tgaagatgtcttccaacatataact 172  Q
     |||||||||||| || ||||||||    
T  1754830 agaagatgtcttcgaaaatataact 1754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 1754340 - 1754243
Alignment:
Q  47 gtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttg 144  Q
    |||||||| ||||||||| | ||||||||| | ||| | ||  || |||||||| |||||| |||||||||||| |||||||| ||||| ||||||||    
T  1754340 gtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 1759259 - 1759392
Alignment:
Q  17 ggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttg----aatcaagctgaggaagagtttggatat 112  Q
    ||||||||| ||| ||||||  |  |||||||||||||||| |||||| | ||||| ||||| ||||||    || |||||||||||| | |||| |||     
T  1759259 ggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatac 1759358  T
Q  113 gatcatccaatgggtggcctcaccattccttgca 146  Q
     | |||||||||||||| |||||||||| |||||    
T  1759359 aaccatccaatgggtggtctcaccattctttgca 1759392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 50910004 - 50910114
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacag 50910103  T
Q  150 aagatgtcttc 160  Q
    |||||||||||    
T  50910104 aagatgtcttc 50910114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 55084783 - 55084936
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    ||||||||||||||||||||||| ||| ||||||  |  | ||| | || || ||||||||||| ||||||||||||||||||| ||  || ||||||||    
T  55084783 ttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaaga 55084882  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgt 156  Q
     |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  55084883 atttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgt 55084936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 50904882 - 50904792
Alignment:
Q  56 ttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||||||| ||||||||||||||||||||| || ||| ||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  50904882 ttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgca 50904792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 50911965 - 50911863
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||||| |    
T  50911965 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 50911866  T
Q  150 aag 152  Q
    |||    
T  50911865 aag 50911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 38024971 - 38024868
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| |||| |||||| |||| |||| |||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |    
T  38024971 tcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacag 38024872  T
Q  150 aaga 153  Q
    ||||    
T  38024871 aaga 38024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 38028862 - 38028759
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacag 38028763  T
Q  150 aaga 153  Q
    ||||    
T  38028762 aaga 38028759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 38031423 - 38031320
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| |||| |||||| |||| |||| |||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |    
T  38031423 tcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacag 38031324  T
Q  150 aaga 153  Q
    ||||    
T  38031323 aaga 38031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 38043947 - 38044049
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||| ||| |||| |||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |    
T  38043947 tcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttgcaccg 38044046  T
Q  150 aag 152  Q
    |||    
T  38044047 aag 38044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 48840806 - 48840702
Alignment:
Q  51 catatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactga 150  Q
    |||| ||||||||| | ||||||||||||||||||| | |||  ||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||    
T  48840806 catacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacaga 48840708  T
Q  151 agatgt 156  Q
    ||||||    
T  48840707 agatgt 48840702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 38040177 - 38040074
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||| |||||||| || |||||||| ||||||||||| |||||||| ||||||||||| |    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacag 38040078  T
Q  150 aaga 153  Q
    ||||    
T  38040077 aaga 38040074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 38036888 - 38036792
Alignment:
Q  51 catatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 147  Q
    |||| ||||||||| ||||||||||| | ||||||| |||||| |||||||| || |||||||| ||||||||||| |||||||| |||||||||||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcac 38036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 38033875 - 38033802
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaat 123  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| ||||||||||| ||||||||    
T  38033875 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 55088138 - 55088051
Alignment:
Q  59 aaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 146  Q
    ||||| ||||||||||  || ||||| |||| |||||||||||||||||| |   |||||||||||||||| ||||| ||||| ||||    
T  55088138 aaccacccttcatttcttgatttgttaaatcgagctgaggaagagtttggtttcaatcatccaatgggtggtctcactattccatgca 55088051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 50913493 - 50913650
Alignment:
Q  3 ttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaaga 102  Q
    ||||||||||||||||||||||| ||| | ||||| |  ||||  ||||||  |||||  | |||| ||||||||| ||| | |  |||||||| || ||    
T  50913493 ttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagagga 50913592  T
Q  103 gtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgtcttc 160  Q
     ||||| ||   ||||||||||||||| || || ||||| ||||  ||||||||||||    
T  50913593 atttggctactgtcatccaatgggtggtcttacaattccctgcaaggaagatgtcttc 50913650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 3073613 - 3073719
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| ||||| ||| ||  || |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |    
T  3073613 tcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacag 3073712  T
Q  150 aagatgt 156  Q
    |||||||    
T  3073713 aagatgt 3073719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 21607392 - 21607288
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||| | |||| |||||| |||| |||| |||||| |||||||| |||||||||||||| |||||||||||||||||  |||||||||| |    
T  21607392 tcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacag 21607293  T
Q  150 aagat 154  Q
    |||||    
T  21607292 aagat 21607288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 21604850 - 21604747
Alignment:
Q  50 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactg 149  Q
    ||||| ||||||||| ||||||||||| || |||||| |||||  |||||||| || |||||||| ||||||||||| |||||||| ||||||||||| |    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacag 21604751  T
Q  150 aaga 153  Q
    ||||    
T  21604750 aaga 21604747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 21634603 - 21634693
Alignment:
Q  66 cttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcactgaagatgt 156  Q
    |||| |||||||||||| ||| |||||| |||||||| |||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||    
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgt 21634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University