View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10880_high_2 (Length: 500)

Name: NF10880_high_2
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10880_high_2
NF10880_high_2
[»] chr4 (20 HSPs)
chr4 (209-485)||(54501525-54501802)
chr4 (11-138)||(54501873-54502000)
chr4 (309-378)||(20627535-20627604)
chr4 (309-370)||(23089269-23089330)
chr4 (309-378)||(31914531-31914600)
chr4 (309-369)||(12206772-12206832)
chr4 (309-377)||(20628330-20628398)
chr4 (309-369)||(31135178-31135238)
chr4 (309-368)||(34978352-34978411)
chr4 (309-370)||(23088284-23088345)
chr4 (317-380)||(42523218-42523281)
chr4 (311-373)||(41164164-41164226)
chr4 (308-377)||(42523877-42523946)
chr4 (309-369)||(12210918-12210978)
chr4 (309-369)||(31689185-31689245)
chr4 (309-369)||(34837971-34838031)
chr4 (309-381)||(48314375-48314447)
chr4 (309-368)||(34836758-34836817)
chr4 (309-347)||(31908375-31908413)
chr4 (328-369)||(31135898-31135939)
[»] chr2 (5 HSPs)
chr2 (308-375)||(29558159-29558225)
chr2 (309-378)||(18767560-18767629)
chr2 (309-370)||(9244252-9244313)
chr2 (308-379)||(5483904-5483975)
chr2 (328-378)||(16591517-16591567)
[»] chr6 (11 HSPs)
chr6 (309-378)||(19237594-19237663)
chr6 (320-380)||(17279903-17279963)
chr6 (309-373)||(5860558-5860622)
chr6 (317-369)||(17280699-17280751)
chr6 (309-373)||(25359507-25359571)
chr6 (309-368)||(8238077-8238136)
chr6 (309-359)||(8683866-8683916)
chr6 (324-378)||(10792506-10792560)
chr6 (309-378)||(10793570-10793639)
chr6 (324-378)||(7001764-7001818)
chr6 (317-373)||(29375039-29375095)
[»] chr7 (10 HSPs)
chr7 (309-371)||(5997609-5997671)
chr7 (309-370)||(41970896-41970957)
chr7 (309-378)||(45551006-45551075)
chr7 (309-378)||(45551796-45551865)
chr7 (309-369)||(5995261-5995321)
chr7 (317-377)||(27268234-27268294)
chr7 (309-373)||(28778095-28778159)
chr7 (317-378)||(27258098-27258160)
chr7 (309-347)||(1409384-1409422)
chr7 (309-347)||(38887339-38887377)
[»] chr3 (10 HSPs)
chr3 (309-375)||(40929851-40929917)
chr3 (309-369)||(54285815-54285875)
chr3 (309-375)||(27359829-27359895)
chr3 (309-369)||(4300941-4301001)
chr3 (309-369)||(17619144-17619204)
chr3 (309-381)||(51341882-51341954)
chr3 (309-364)||(28422850-28422905)
chr3 (317-369)||(17615038-17615090)
chr3 (309-377)||(27317467-27317535)
chr3 (309-349)||(29032824-29032864)
[»] chr5 (3 HSPs)
chr5 (309-378)||(33471173-33471242)
chr5 (317-359)||(22671622-22671664)
chr5 (324-377)||(33471845-33471898)
[»] chr8 (8 HSPs)
chr8 (311-371)||(32744020-32744080)
chr8 (309-378)||(30971293-30971362)
chr8 (309-378)||(30971997-30972066)
chr8 (309-369)||(16101531-16101591)
chr8 (309-369)||(16106024-16106084)
chr8 (309-369)||(16113264-16113324)
chr8 (309-378)||(1636856-1636925)
chr8 (309-381)||(5152441-5152513)
[»] chr1 (10 HSPs)
chr1 (309-381)||(16801981-16802053)
chr1 (309-381)||(17238605-17238677)
chr1 (309-381)||(17239394-17239466)
chr1 (309-369)||(42026904-42026964)
chr1 (309-369)||(42031693-42031753)
chr1 (309-380)||(16802671-16802742)
chr1 (308-375)||(34361217-34361284)
chr1 (324-378)||(34269075-34269129)
chr1 (324-378)||(34275310-34275364)
chr1 (309-378)||(34267984-34268053)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 209 - 485
Target Start/End: Complemental strand, 54501802 - 54501525
Alignment:
Q  209 cgtttacaaagtgtatgttaaaatacataagttgtctttcaaaacatataatctcatttgtcgagaacaaacaatttgaatttaaactctaaataacttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54501802 cgtttacaaagtgtatgttaaaatacataagttgtctttcaaaacatataatctcatttgtcgagaacaaacaatttgaatttaaactctaaataacttt 54501703  T
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatgnnnnnnnnnnnnggaccaattaaaatc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||            |||||||||||||||    
T  54501702 aatagactcactcatttttatgaaggtctaatttagcaaccaacacatttttacttggacaaaaagactcatgtttttgttttttggaccaattaaaatc 54501603  T
Q  409 aaaggacacaaatgtaattatta-annnnnnnnaaggtcctttggtatctcgtatcacgcactttttatctgagtttt 485  Q
    ||||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||    
T  54501602 aaaggacacaaatgtaattgttagtttttttttaaggtcctttggtatcttgtatcacgcactttttatctgagtttt 54501525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 54502000 - 54501873
Alignment:
Q  11 caaaggcaggtgacactacaatggtcgcgatcaaggaaagaaatgaagaaagcgaagacaatggagattaggtggccagagctctaataccaattgaaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  54502000 caaaggcaggtgacactacaatggtcgcgatcaaggaaagaaatgaagaaagcggagacaatggagtttaggtggccacagctctaataccaattgaaaa 54501901  T
Q  111 ggaagaaacacaagaaaaggggtttgaa 138  Q
    ||||||||||||||||||||||||||||    
T  54501900 ggaagaaacacaagaaaaggggtttgaa 54501873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 20627535 - 20627604
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||||||| ||||| ||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  20627535 aatagacccactcattttcatgaaagtctattttagcacccaacaccttttcacttggacacaaagaccc 20627604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 23089330 - 23089269
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaa 370  Q
    ||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||    
T  23089330 aatagacccactcattttcatgtaggtctattttagcaaccaacaccttttcacttggacaa 23089269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 31914531 - 31914600
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||||||| |||||| |||| ||||||||||| |||||||| ||||||||| ||||||||    
T  31914531 aatagacccactcattttcatgaagatctattttagcaaccagcaccttttcacttggacacaaagaccc 31914600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 12206772 - 12206832
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||||||||||||||| ||||||||||  |||||||| |||||||||    
T  12206772 aatagacccactcatttttatgaaggtctattttagcaacctgcaccttttcacttggaca 12206832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 20628398 - 20628330
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacc 377  Q
    ||||||| ||| |||||||||||||||||| |||| ||| ||||||||||| ||| |||||||||||||    
T  20628398 aatagacccacccatttttatgaaggtctattttaccaagcaacaccttttcactaggacaaaaagacc 20628330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 31135178 - 31135238
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    |||||||  ||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  31135178 aatagaccaactcattttcatgaaggtctattttagcaaccaacaccttttcacttggaca 31135238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 34978352 - 34978411
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggac 368  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||| | ||||||    
T  34978352 aatagacccactcatttttatgaaggtctattttatcaaccaacaccttttcaattggac 34978411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 23088284 - 23088345
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaa 370  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||| | |||| |||||    
T  23088284 aatagacccactcattttcatgaaggtctattttagcaaccaacaccttctcacttcgacaa 23088345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 42523218 - 42523281
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccat 380  Q
    |||||||||||||||||||||  ||||||||  |||||||||| | |||||| |||||||||||    
T  42523218 cactcatttttatgaaggtctcttttagcaagtaacaccttttcatttggaccaaaagacccat 42523281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 41164226 - 41164164
Alignment:
Q  311 tagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaa 373  Q
    ||||| || ||||||||||||| ||||| ||||||||||||||| |||| |||||||| ||||    
T  41164226 tagacccattcatttttatgaaagtctattttagcaaccaacacattttcacttggactaaaa 41164164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 42523946 - 42523877
Alignment:
Q  308 taatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacc 377  Q
    ||||||||||||||||||| ||||| ||||  ||||||||  |||||||||| |||||||| ||| ||||    
T  42523946 taatagactcactcattttcatgaaagtctgttttagcaagtaacaccttttcacttggaccaaatgacc 42523877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 12210978 - 12210918
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    |||||||  ||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  12210978 aatagaccaactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 12210918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 31689185 - 31689245
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| ||| |||||    
T  31689185 aatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcactcggaca 31689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 34838031 - 34837971
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| ||||||||||||||||| | || ||||||||||||||| |||| | |||||||    
T  34838031 aatagacccactcatttttatgaagttttattttagcaaccaacactttttcaattggaca 34837971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 48314375 - 48314447
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    ||||||| |||||||||| ||||| ||||| |||||||| ||||||||||| | || ||| |||| |||||||    
T  48314375 aatagacccactcattttcatgaaagtctattttagcaagcaacaccttttcatttagactaaaatacccatg 48314447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 34836758 - 34836817
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggac 368  Q
    ||||||| |||| ||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  34836758 aatagacccacttatttttatgaaggtctattttatcaaccaacatcttttcaattggac 34836817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 31908413 - 31908375
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaa 347  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  31908413 aatagacccactcatttttatgaaggtctattttagcaa 31908375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 31135939 - 31135898
Alignment:
Q  328 atgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  31135939 atgaaggtgtattttagcaaccaacaccttttcacttggaca 31135898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 29558159 - 29558225
Alignment:
Q  308 taatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaaga 375  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  29558159 taatagacccactcatttttatgaaggtcta-tttagcaaccaacacctttttacttggacacaaaga 29558225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 18767629 - 18767560
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||| ||||||||    
T  18767629 aatagactcactcatttttataaaggtctattttagcaaccaacaccttttcacttagacacaaagaccc 18767560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 9244252 - 9244313
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaa 370  Q
    ||||||| |||||||||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  9244252 aatagacccactcatttttatgaaggtctattttagcatccaacaccttttcagttggacaa 9244313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 5483975 - 5483904
Alignment:
Q  308 taatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccca 379  Q
    ||||||||  ||||||||| || |||||||| ||||||| |||||||||||| | ||||||||||| |||||    
T  5483975 taatagaccaactcattttcataaaggtctattttagcatccaacaccttttcaattggacaaaaacaccca 5483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 16591567 - 16591517
Alignment:
Q  328 atgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  16591567 atgaaggtctattttagcaaccaacaccttttcacttggacacaaaaaccc 16591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 19237663 - 19237594
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  19237663 aatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcacttggacataaagaccc 19237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 17279903 - 17279963
Alignment:
Q  320 tcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccat 380  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||    
T  17279903 tcatttttatgaaggtctattttagcaaccagcacctttttacttggacacaaatacccat 17279963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 5860558 - 5860622
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaa 373  Q
    ||||||| ||||||||||||||||||| || ||||||||| ||||| |||| | |||||||||||    
T  5860558 aatagacccactcatttttatgaaggtgtattttagcaacaaacacattttcatttggacaaaaa 5860622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 17280751 - 17280699
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    |||||||||| || |||||||| |||||||||||||||||||| |||||||||    
T  17280751 cactcattttcattaaggtctattttagcaaccaacaccttttcacttggaca 17280699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 25359507 - 25359571
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaa 373  Q
    ||||||||||||   ||||||||| ||||| |||||||||||||||||||||| |||||| ||||    
T  25359507 aatagactcacttcattttatgaaagtctattttagcaaccaacacctttttatttggaccaaaa 25359571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 8238077 - 8238136
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggac 368  Q
    |||||||||||||||||||||||| ||||| | || ||||||||||||||| | ||||||    
T  8238077 aatagactcactcatttttatgaaagtctattctatcaaccaacaccttttcaattggac 8238136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 8683916 - 8683866
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttt 359  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  8683916 aatagacccactcattttcatgaaggtctattttagcaaccaacatctttt 8683866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 10792506 - 10792560
Alignment:
Q  324 ttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||| ||||||||    
T  10792506 ttttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagaccc 10792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 10793639 - 10793570
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||  |||||| |||||||| |||||||| ||||||||||| ||||||||| ||| ||||    
T  10793639 aatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaaaaccc 10793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 7001818 - 7001764
Alignment:
Q  324 ttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||||||| |||||||  ||||||||||| ||||||||| || |||||    
T  7001818 ttttatgaaggtctattttagcatgcaacaccttttcacttggacacaatgaccc 7001764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 29375095 - 29375039
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaa 373  Q
    |||||||||| ||||||||| | ||||||||  | |||||||| |||||||||||||    
T  29375095 cactcattttcatgaaggtccattttagcaaggagcaccttttcacttggacaaaaa 29375039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 5997671 - 5997609
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaa 371  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||    
T  5997671 aatagacccactcattttcatgaaggtctattttagcaaccagcaccttttcacttggacaaa 5997609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 41970896 - 41970957
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaa 370  Q
    ||||||| |||||||||| |||||| |||| |||||||||||||||||||| ||||||||||    
T  41970896 aatagacccactcattttcatgaagatctattttagcaaccaacaccttttcacttggacaa 41970957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 45551006 - 45551075
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||||||||| | || |||||||||||||    
T  45551006 aatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagaccc 45551075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 45551865 - 45551796
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||||||||| | || |||||||||||||    
T  45551865 aatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcattttgacaaaaagaccc 45551796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 5995261 - 5995321
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||||||| | |||||||    
T  5995261 aatagacccactcattttcatgaaggtctattttagcaaccaacaccttttcatttggaca 5995321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 27268294 - 27268234
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacc 377  Q
    |||||||||| ||||||||||| |||||||| || |||||||| ||||||||| |||||||    
T  27268294 cactcattttcatgaaggtctattttagcaatcagcaccttttcacttggacataaagacc 27268234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 28778159 - 28778095
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaa 373  Q
    ||||||| |||||||||| || |||||||| |||||| ||||||||||||||  |||||||||||    
T  28778159 aatagacccactcattttcatcaaggtctattttagcgaccaacacctttttctttggacaaaaa 28778095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 27258160 - 27258098
Alignment:
Q  317 cactcatttttatgaagg-tctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    |||||||||| ||||||| |||| |||||||| ||||||||||| ||||||||| ||||||||    
T  27258160 cactcattttcatgaagggtctattttagcaatcaacaccttttcacttggacataaagaccc 27258098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 1409384 - 1409422
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaa 347  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  1409384 aatagacccactcatttttatgaaggtctattttagcaa 1409422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 38887339 - 38887377
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaa 347  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  38887339 aatagactcactcattttcatgaaggtctattttagcaa 38887377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 40929917 - 40929851
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaaga 375  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||| | |||||| ||||||    
T  40929917 aatagacccactcatttttatgaaggtttattttagcaaccaacaccttttcatttggacgaaaaga 40929851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 54285875 - 54285815
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||| | |||||||    
T  54285875 aatagacccactcatttttatgaaggtctattttagcaacctacaccttttcatttggaca 54285815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 27359895 - 27359829
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaaga 375  Q
    ||||||| |||||||||| ||||||||||| |||||||| ||||||||||| ||| || ||||||||    
T  27359895 aatagacccactcattttcatgaaggtctattttagcaaacaacaccttttcactaggccaaaaaga 27359829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 4300941 - 4301001
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||| ||||| |||||| |||| |||||||||||||||||||| |||||||||    
T  4300941 aatagacccacttattttcatgaagatctattttagcaaccaacaccttttcacttggaca 4301001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 17619204 - 17619144
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| |||||||||||  ||||||| |||||||||    
T  17619204 aatagacccactcattttcatgaaggtctattttagcaaccagtaccttttcacttggaca 17619144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 51341882 - 51341954
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    |||||||  ||||||| | ||||||||||| |||| ||||||||||||||||||||| |||| || |||||||    
T  51341882 aatagacctactcattctcatgaaggtctattttaacaaccaacacctttttacttgaacaagaatacccatg 51341954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 28422905 - 28422850
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttactt 364  Q
    ||||||| |||||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  28422905 aatagacccactcatttttatgaaagtctattttagcaaccatcaccttttcactt 28422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 17615038 - 17615090
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    |||||||||||||||||||||| |||||||||   |||||||| |||||||||    
T  17615038 cactcatttttatgaaggtctattttagcaacttgcaccttttcacttggaca 17615090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 27317535 - 27317467
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacc 377  Q
    ||||||| | |||||||| |||||||| || |||||||| ||||||||||| | | |||||||| ||||    
T  27317535 aatagacccgctcattttcatgaaggtttattttagcaagcaacaccttttcattaggacaaaacgacc 27317467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 29032864 - 29032824
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaacc 349  Q
    ||||||| || ||||||||||||||||||| ||||||||||    
T  29032864 aatagacccattcatttttatgaaggtctattttagcaacc 29032824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 33471173 - 33471242
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  33471173 aatagacccattcattttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaagaccc 33471242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Original strand, 22671622 - 22671664
Alignment:
Q  317 cactcatttttatgaaggtctaatttagcaaccaacacctttt 359  Q
    |||||||||| ||||||||||| |||| |||||||||||||||    
T  22671622 cactcattttcatgaaggtctattttaacaaccaacacctttt 22671664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 33471898 - 33471845
Alignment:
Q  324 ttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacc 377  Q
    ||||||||||||||| ||||||||| | |||||||| | |||||| ||||||||    
T  33471898 ttttatgaaggtctattttagcaactagcaccttttcatttggactaaaagacc 33471845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 32744020 - 32744080
Alignment:
Q  311 tagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaa 371  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  32744020 tagacttattcatttttatgaaggtctattttagcaaccaacaccttttcacgtggacaaa 32744080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 30971293 - 30971362
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||| ||| ||||    
T  30971293 aatagacccactcattttcatgaaggtctattttagcaaccatcactttttcacttggacacaaaaaccc 30971362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 30972066 - 30971997
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||||||||| | ||||||| ||| ||||    
T  30972066 aatagacccactcaatttcatgaaggtctattttagcaaccaacaccttttcatttggacacaaaaaccc 30971997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 16101531 - 16101591
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  16101531 aatagacacactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 16101591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 16106084 - 16106024
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  16106084 aatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 16106024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 16113324 - 16113264
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  16113324 aatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 16113264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 1636856 - 1636925
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    |||||| ||||||||||| |||||| |||| ||| |||||||||| ||||| | ||||||| ||||||||    
T  1636856 aatagattcactcattttcatgaagatctatttttgcaaccaacatcttttcatttggacacaaagaccc 1636925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 5152513 - 5152441
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    ||||||| | |||||||||||||||||||| ||||||||    |||||||| | |||||| |||||| |||||    
T  5152513 aatagacccgctcatttttatgaaggtctattttagcaagtggcaccttttcatttggaccaaaagatccatg 5152441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 16801981 - 16802053
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    ||||||| |||||||||| ||||||||||| ||||||||    |||||||| ||||||||||||| |||||||    
T  16801981 aatagacccactcattttcatgaaggtctattttagcaaggggcaccttttcacttggacaaaaatacccatg 16802053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 17238605 - 17238677
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    ||||||| |||||||||||||||||||||| ||||||||  | ||||||||   |||||| ||||||||||||    
T  17238605 aatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcgtttggaccaaaagacccatg 17238677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 17239466 - 17239394
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccatg 381  Q
    ||||||| |||||||||||||||||||||| ||||||||  | |||||||| | |||||| |||| |||||||    
T  17239466 aatagacccactcatttttatgaaggtctattttagcaagtagcaccttttcatttggaccaaaaaacccatg 17239394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 42026904 - 42026964
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  42026904 aatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 42026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 42031753 - 42031693
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggaca 369  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||| |||||||||    
T  42031753 aatagacccactcattttcatgaaggtctattttagcaacctgcaccttttcacttggaca 42031693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 16802742 - 16802671
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagacccat 380  Q
    ||||||| ||||||||||||| |||||||| ||||||||  |  ||||||| |||||||||||| |||||||    
T  16802742 aatagacccactcatttttataaaggtctattttagcaagaagtaccttttcacttggacaaaaggacccat 16802671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 34361217 - 34361284
Alignment:
Q  308 taatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaaga 375  Q
    |||||||  |||| |||||||||||||| || ||||||||||||| |||||| |||||||||| ||||    
T  34361217 taatagaaccacttatttttatgaaggtttattttagcaaccaacgccttttgacttggacaagaaga 34361284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 34269129 - 34269075
Alignment:
Q  324 ttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||| ||||||||    
T  34269129 ttttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagaccc 34269075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 34275364 - 34275310
Alignment:
Q  324 ttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||| ||||||||    
T  34275364 ttttatgaaggtctattttagcaagcaacaccttttcatttggacacaaagaccc 34275310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 34267984 - 34268053
Alignment:
Q  309 aatagactcactcatttttatgaaggtctaatttagcaaccaacacctttttacttggacaaaaagaccc 378  Q
    ||||||| |||||  |||||| |||||||| |||||||| ||||||||||| ||||||||| ||| ||||    
T  34267984 aatagacccactccattttatcaaggtctattttagcaagcaacaccttttcacttggacacaaaaaccc 34268053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University