View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10880_high_3 (Length: 369)
Name: NF10880_high_3
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 142 - 354
Target Start/End: Original strand, 11111623 - 11111835
Alignment:
| Q |
142 |
ttttttgaaggaatgttatggggtaaatctaatgaccaaaatgtctggttttgaagtgaataaccgagaaaaaacggttatggctgtgaatctgacccaa |
241 |
Q |
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| T |
11111623 |
ttttttgaagaaatgttatggggtaaatctaatgaccaaaatgtctggttttgaagtgaataaccgagaaaaaacggttatggctgtgaatctgacccaa |
11111722 |
T |
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| Q |
242 |
ggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgttcagtcgcagcagaataacactactg |
341 |
Q |
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| T |
11111723 |
ggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgttcagtcgcagcagaataacactactg |
11111822 |
T |
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| Q |
342 |
agctgtaccgact |
354 |
Q |
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| T |
11111823 |
agccgtaccgact |
11111835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 11107977 - 11108093
Alignment:
| Q |
216 |
cggttatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaagcttgt |
315 |
Q |
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| T |
11107977 |
cggttatggctgtgaatctgacacaaggtgcgatagtaaagatgtgtttcacatcggaagaattgcacccggtgttacaattcatcgatttgaagcctgt |
11108076 |
T |
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| Q |
316 |
tcagtcgcagcagaata |
332 |
Q |
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| T |
11108077 |
tcagtcgcagcagaata |
11108093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 11116169 - 11116291
Alignment:
| Q |
210 |
aaaaaacggttatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatgaa |
309 |
Q |
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| T |
11116169 |
aaaaagcgattatggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttgcacccggtgttacaagttatcgatttgaa |
11116268 |
T |
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| Q |
310 |
gcttgttcagtcgcagcagaata |
332 |
Q |
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| T |
11116269 |
gcttgttcagtcgcagcagaata |
11116291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 11108962 - 11109093
Alignment:
| Q |
209 |
gaaaaaacggttatggctgtgaatctgacccaaggtgcgataataacaatgtgtttcacatcggaagtatgggaaccggtgttacaagttttcgatatga |
308 |
Q |
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| T |
11108962 |
gaaaaagcggttatggctgtgaatctgacacaaggtgcgataatgaagatgtgtttcacatcggaggaaatccaaccggttttacaagttatcgatttga |
11109061 |
T |
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| Q |
309 |
agcttgttcagtcgcagcagaataacactact |
340 |
Q |
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| T |
11109062 |
agcttttgcagtcgcagcaaaatagcactact |
11109093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 11111499 - 11111541
Alignment:
| Q |
18 |
caggaggctctgagggacctcaccacaaacccttattcataac |
60 |
Q |
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| T |
11111499 |
caggaggctctgagggacctcaccacaaacccttattcataac |
11111541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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