View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10880_low_1 (Length: 598)
Name: NF10880_low_1
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 45142301 - 45142883
Alignment:
| Q |
1 |
gatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142301 |
gatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaa |
45142400 |
T |
|
| Q |
101 |
tttccttggatccaattttaatctattgtttcataacaatagattcaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142401 |
tttccttgcatccaattttaatctattatttcataacaatagattgaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatga |
45142500 |
T |
|
| Q |
201 |
acttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142501 |
acttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatcct |
45142600 |
T |
|
| Q |
301 |
tgcactgaagaatcttcaaatatttgacagagtactattcaacaagttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142601 |
tgcactgaagaatcttcaaatatttgacagagtactattaaacaagttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaa |
45142700 |
T |
|
| Q |
401 |
aatcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142701 |
aatcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaacttc |
45142800 |
T |
|
| Q |
501 |
tcgtgtttatagtttcatccagcttctagagtggaaaagtgtttaacacggtctacaaaaaacaaatgcttggaaattgtttg |
583 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45142801 |
tcgtgtttatagtttcatccggcttctagagtggaaaagtgtttaacacggtctacaacaaacaaatgcttggaaattgtttg |
45142883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University