View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10880_low_10 (Length: 252)
Name: NF10880_low_10
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 3435390 - 3435486
Alignment:
| Q |
153 |
atttgtgtgttctaagaaatgaaagtttacttagttttttaataacattnnnnnnntaaaggagccaacttcatttccaaaacgaatctttttacaa |
249 |
Q |
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| T |
3435390 |
atttgtgtgttctaagagatgaaagtttacttagttttttaataacattaaaaaaataaaggagccaacttcatttccaaaacgaatctttttacaa |
3435486 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 3435249 - 3435304
Alignment:
| Q |
11 |
catagggggtatggtgaatgcttgtaattggtcacggggatagaaaattaacgaac |
66 |
Q |
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| T |
3435249 |
catagggggtatggtgaatgcttataattggtcacggggatagaaaattaacgaac |
3435304 |
T |
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