View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10880_low_4 (Length: 380)
Name: NF10880_low_4
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 103 - 361
Target Start/End: Original strand, 13058267 - 13058525
Alignment:
| Q |
103 |
ggtagtagcacctattttagaaaagatggttgattctcgactaaggtggtttgtgcatgtgcggagggtagtctaattgctagaggcagaggaagaccag |
202 |
Q |
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| T |
13058267 |
ggtagtagcacctattttagaaaagatggttgattctcgactaaggtggtttgtgcatgtgcggagggtagtctaattgctagaggcagaggaagaccag |
13058366 |
T |
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| Q |
203 |
aaacctagaggtcaatgatcatgattggttattttcatgatttgtttttctattcaattaagattatgagtcttgtatccccattcccaataaatagggt |
302 |
Q |
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| T |
13058367 |
aaacctagaggtcaatgatcatgattggttattttcatgatttgtttttctattcaattaagattatgagtcttgtatccccattcccaataaatagggt |
13058466 |
T |
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| Q |
303 |
cagtgcttaattgtttggtatcctcaaatcattaatcataaccatattttaaagtcttt |
361 |
Q |
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| T |
13058467 |
cagtgcttaattgtttggtatcctcaaatcattaatcataaccatattttaaagtcttt |
13058525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 13058175 - 13058239
Alignment:
| Q |
14 |
agatgagaatgcaatactagatgtgcgaaaatactagattggatacagttaggtatgatagcattt |
79 |
Q |
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| T |
13058175 |
agatgagaatgcaata-tagatgtgcgaaaatactagattggatacagttaggtatgatagcattt |
13058239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 29229907 - 29229845
Alignment:
| Q |
107 |
gtagcacctattttagaaaagatggttgattctcgactaaggtggtttgtgcatgtgcggagg |
169 |
Q |
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| T |
29229907 |
gtagcacctattgtagaaaagatggttgaatctcgatttatgtggtttgtacatgtggggagg |
29229845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 46989906 - 46989968
Alignment:
| Q |
107 |
gtagcacctattttagaaaagatggttgattctcgactaaggtggtttgtgcatgtgcggagg |
169 |
Q |
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| T |
46989906 |
gtagcacctattgtagaaaagatggttgaatttcatcttaggtggtttgggcatgtgtggagg |
46989968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 27773556 - 27773609
Alignment:
| Q |
227 |
ttggttattttcatgatttgtttttctattcaattaagattatgagtcttgtat |
280 |
Q |
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| T |
27773556 |
ttggttattatcatgatttgtttcccaattcaattaagattaggagtcttgtat |
27773609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 30299103 - 30299048
Alignment:
| Q |
227 |
ttggttattttcatgatttgtttttctattcaattaagattatgagtcttgtatcc |
282 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
30299103 |
ttggttatgctcatgatttgtttccctattcaattaggattaggagtcttgtatcc |
30299048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 30327971 - 30327916
Alignment:
| Q |
227 |
ttggttattttcatgatttgtttttctattcaattaagattatgagtcttgtatcc |
282 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
30327971 |
ttggttatgctcatgatttgtttccctattcaattaggattaggagtcttgtatcc |
30327916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 49841622 - 49841670
Alignment:
| Q |
107 |
gtagcacctattttagaaaagatggttgattctcgactaaggtggtttg |
155 |
Q |
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| T |
49841622 |
gtagcacctatattagaaaagatggtggaaactagactaaggtggtttg |
49841670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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