View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10880_low_5 (Length: 373)
Name: NF10880_low_5
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 32225501 - 32225844
Alignment:
| Q |
17 |
ttactctattccgaagtctattttat-ggtcaactatatcatgtatatgctactcatttcggaagtcgattttgtgggtcaacgattacatgtatacgtt |
115 |
Q |
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| T |
32225501 |
ttactctattccgaggtctattttataggtcaacgatatcatgtatatgctactcatttctgaagtcgattttgtgggttaacgattacatgtatacatt |
32225600 |
T |
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| Q |
116 |
actcatttcggaagtcgattttattggtcaacgatgtcatgatacgttactcattttggaagtcggttttatgggtcaacgatagctttgattatatcat |
215 |
Q |
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| T |
32225601 |
actcatttcaaaagtcgattttattggtcaacgatgtcatgatacgttactcattttggaagtcggttttatgggtcaacggtagctctgattgtatcat |
32225700 |
T |
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| Q |
216 |
atacgcgttactcattgaattaaaaaagttgattttacgggtcaacggacacttcaagatgggatctcgatcatttataaagatcggacaactgtcattc |
315 |
Q |
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| T |
32225701 |
atacacgttactcattgaattaaaaaagttgattttatgggtcaacggacacttcaagatgggatctcgatcatttataaagatcggacaactgtcattc |
32225800 |
T |
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| Q |
316 |
taacttcccaatttgcgaaagtcacgtgagtcatctgatctctg |
359 |
Q |
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| T |
32225801 |
taacttcccaatttgcgaaagtcacgtgagtcatctgatctctg |
32225844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 32225492 - 32225586
Alignment:
| Q |
105 |
atgtatacgttactcatttcggaagtcgattttattggtcaacgatgtcatg-atacgttactcattttggaagtcggttttatgggtcaacgat |
198 |
Q |
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| T |
32225492 |
atgtatacgttactctattccgaggtctattttataggtcaacgatatcatgtatatgctactcatttctgaagtcgattttgtgggttaacgat |
32225586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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