View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10880_low_7 (Length: 340)
Name: NF10880_low_7
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10880_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 44686012 - 44685691
Alignment:
| Q |
18 |
cttacaactttcattgacttgagcatta----gtgttcttgcagttacacgacctcacatacattagcaacgtcgtcatctatgaattccgatcaacttc |
113 |
Q |
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| T |
44686012 |
cttacaactttcattgacttgaacattaattagtgttcatgcagttacacgacctcacatacattagcaacgtcgtcatctatgaattccgatcaactta |
44685913 |
T |
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| Q |
114 |
ggctgtcgtcttttaggtctattcgggatcaaaagaaaacatagaaacatgtgaacaggaaattaaatagacagtagtggctgtggtatgtcatccaact |
213 |
Q |
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| T |
44685912 |
ggccgtcgtcttttaggtttattcgggatcaaaagaaaacatagaaacatgt-aacaggaaattaaatagacagtagtggctgtggtatgtcatccaact |
44685814 |
T |
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| Q |
214 |
aattagagatgacaaaaagcattttagggaggtcagaaccgaaataaagaaatatatga------atacatgaagatatttgatgcttttactactatta |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44685813 |
aattagagatgaaaaaaagcattttagggaggtcagaaccgaaataaagaaatatatgaacagcgatacatgaagatatttgatgcttttactactatta |
44685714 |
T |
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| Q |
308 |
tgacccatctttcaaattctgtg |
330 |
Q |
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||||||||||||||||||||||| |
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| T |
44685713 |
tgacccatctttcaaattctgtg |
44685691 |
T |
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