View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10880_low_8 (Length: 282)

Name: NF10880_low_8
Description: NF10880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10880_low_8
NF10880_low_8
[»] chr7 (9 HSPs)
chr7 (183-266)||(41328215-41328298)
chr7 (182-266)||(39981312-39981396)
chr7 (185-269)||(41329504-41329588)
chr7 (179-269)||(32653455-32653545)
chr7 (186-241)||(32653729-32653784)
chr7 (203-269)||(35296852-35296918)
chr7 (179-251)||(669440-669512)
chr7 (186-267)||(10957190-10957271)
chr7 (183-251)||(26135637-26135705)
[»] chr1 (16 HSPs)
chr1 (184-266)||(51445587-51445669)
chr1 (184-269)||(14479549-14479634)
chr1 (185-266)||(14478264-14478345)
chr1 (186-269)||(51446877-51446960)
chr1 (182-269)||(28051641-28051728)
chr1 (182-269)||(28050316-28050403)
chr1 (1-66)||(38462830-38462894)
chr1 (131-184)||(38462959-38463012)
chr1 (201-267)||(40533640-40533706)
chr1 (181-267)||(48527528-48527614)
chr1 (175-267)||(12667311-12667403)
chr1 (185-267)||(26287820-26287902)
chr1 (185-264)||(5611724-5611803)
chr1 (185-251)||(26286410-26286476)
chr1 (201-269)||(40634725-40634793)
chr1 (183-251)||(5613137-5613205)
[»] chr2 (12 HSPs)
chr2 (184-266)||(4921095-4921177)
chr2 (183-266)||(28611289-28611372)
chr2 (183-269)||(28610018-28610104)
chr2 (185-269)||(4919825-4919909)
chr2 (188-267)||(8321279-8321358)
chr2 (210-264)||(45699523-45699577)
chr2 (182-267)||(19398836-19398921)
chr2 (201-267)||(19397544-19397610)
chr2 (226-267)||(45699568-45699609)
chr2 (179-238)||(8320774-8320833)
chr2 (182-267)||(34147131-34147216)
chr2 (175-255)||(34513601-34513681)
[»] chr4 (14 HSPs)
chr4 (182-266)||(26496346-26496430)
chr4 (182-267)||(8363425-8363510)
chr4 (182-267)||(56157532-56157617)
chr4 (182-269)||(36243514-36243601)
chr4 (185-265)||(56156933-56157013)
chr4 (183-266)||(52137422-52137505)
chr4 (182-269)||(36244801-36244888)
chr4 (183-269)||(26495118-26495204)
chr4 (184-253)||(20625554-20625623)
chr4 (185-257)||(20620137-20620209)
chr4 (185-266)||(52138832-52138912)
chr4 (182-267)||(1521230-1521315)
chr4 (185-251)||(1519809-1519875)
chr4 (227-267)||(669681-669721)
[»] chr3 (5 HSPs)
chr3 (183-266)||(13620916-13620999)
chr3 (184-261)||(49379698-49379775)
chr3 (185-269)||(13621992-13622076)
chr3 (184-269)||(49380988-49381073)
chr3 (203-264)||(14744079-14744140)
[»] scaffold0114 (1 HSPs)
scaffold0114 (185-269)||(38538-38622)
[»] chr8 (7 HSPs)
chr8 (182-266)||(9854916-9855000)
chr8 (183-265)||(9853563-9853645)
chr8 (208-267)||(42793720-42793779)
chr8 (185-251)||(28291293-28291359)
chr8 (185-267)||(28291401-28291483)
chr8 (209-267)||(38697178-38697236)
chr8 (183-267)||(38697864-38697948)
[»] chr5 (7 HSPs)
chr5 (184-267)||(11796566-11796649)
chr5 (185-257)||(23325910-23325982)
chr5 (183-253)||(23334017-23334087)
chr5 (183-267)||(11797569-11797653)
chr5 (182-251)||(10735758-10735827)
chr5 (183-251)||(35081489-35081557)
chr5 (184-266)||(4127290-4127372)
[»] scaffold0219 (2 HSPs)
scaffold0219 (182-264)||(6890-6972)
scaffold0219 (184-267)||(8226-8309)
[»] chr6 (2 HSPs)
chr6 (185-266)||(11722784-11722865)
chr6 (217-257)||(21777530-21777570)
[»] scaffold2071 (1 HSPs)
scaffold2071 (185-267)||(717-799)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 41328215 - 41328298
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41328215 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 41328298  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 39981312 - 39981396
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39981312 ttaggcttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtcc 39981396  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 41329588 - 41329504
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41329588 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtcccct 41329504  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 32653455 - 32653545
Alignment:
Q  179 aaattaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||| |||||||||||| |||| ||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  32653455 aaatttggcttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtcccct 32653545  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 32653784 - 32653729
Alignment:
Q  186 gcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccata 241  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  32653784 gcttaattggacatttggtcccctaaataattatgtatttacattttggtcccata 32653729  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 35296918 - 35296852
Alignment:
Q  203 gtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  35296918 gtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttggtaccct 35296852  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 669512 - 669440
Alignment:
Q  179 aaattaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||||||||  |||||||| |||| |||||||  |||| |||||||||||||||| | ||||||    
T  669512 aaattaggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaa 669440  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 10957271 - 10957190
Alignment:
Q  186 gcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||| |||||||| |||| |||||    |||| |||||||||||||||| | |||||| | || ||||||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccc 10957190  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 26135637 - 26135705
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||||| |||||||| |||| |||||    |||| |||||||||||||||| || |||||    
T  26135637 taggcttaattggacttttggtcccctaactaatttgatgttttcattttggtcccataacttctaaaa 26135705  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 51445587 - 51445669
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51445587 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 51445669  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 14479634 - 14479549
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14479634 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtcccct 14479549  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 14478264 - 14478345
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  14478264 ggcttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 14478345  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 51446960 - 51446877
Alignment:
Q  186 gcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  51446960 gcttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtcccct 51446877  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 28051728 - 28051641
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28051728 ttaggcttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtcccct 28051641  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 28050316 - 28050403
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  28050316 ttaggcttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcccct 28050403  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38462830 - 38462894
Alignment:
Q  1 atatttttagatttttatcttcattttgggagatatacgcttgattctgagctaataccttatcac 66  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  38462830 atatttctagatttttatcttcattttgggagatatacgcttggttctgagct-ataccttatcac 38462894  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 38462959 - 38463012
Alignment:
Q  131 catacgtacttggtcacttaggttttgtcgtgtgtgtgaggcccatttaaatta 184  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38462959 catacgtacttggtcacttaggttttgtcgtgtgtttgaggcccatttaaatta 38463012  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 40533706 - 40533640
Alignment:
Q  201 tggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||| ||||||||||||  |||||||||||||| ||||||||||||||||  |||||||||||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccc 40533640  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 48527528 - 48527614
Alignment:
Q  181 attaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||||||  |||||||| |||| |||||    ||||||||||||||||||||| | |||||| | |||||||||||||    
T  48527528 attaggcttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccc 48527614  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 12667403 - 12667311
Alignment:
Q  175 atttaaattaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||  |||| ||||||||||| | || | |||||| | |||||| ||||||    
T  12667403 atttaaataaggcttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccc 12667311  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 26287902 - 26287820
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||| ||||||||||||| |||||    |||| |||||||||||||||| | ||||||   |||||||||||||    
T  26287902 ggcttaattggacttttggtcctctaactaatttgttgttttcattttggtcccataattcgtaaaatcaacattttggtccc 26287820  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 5611724 - 5611803
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggt 264  Q
    ||||||||||||| ||||||||| ||| |||||    |||| |||||||||||||||| ||||||||   ||||||||||    
T  5611724 ggcttaattggacttttggtcctttaactaatttgttgttttcattttggtcccataatttgtaaaatcaacattttggt 5611803  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 26286410 - 26286476
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||| |||||||| |||| |||||   ||||| |||||||||||||||| | ||||||    
T  26286410 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaa 26286476  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 40634793 - 40634725
Alignment:
Q  201 tggtcctctaaataattatgc-gtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||| |||||||||| ||| |||||||||||| ||| ||||||  ||||||||||||||| |||||||    
T  40634793 tggtcccctaaataatt-tgcagtttacattttgatccgataaatcataaaactcacattttcgtcccct 40634725  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 5613205 - 5613137
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||||| |||| ||| |||| |||||   ||||| |||||||||||||||| | ||||||    
T  5613205 taggcttaattggacttttgatcccctaactaatttgtcgttttcattttggtcccataattcgtaaaa 5613137  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 4921177 - 4921095
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4921177 aggcttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcc 4921095  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 28611372 - 28611289
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  28611372 taggcttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtcc 28611289  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 28610018 - 28610104
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  28610018 taggcttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtcccct 28610104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 4919825 - 4919909
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||  ||||||||||||||||    
T  4919825 ggcttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtcccct 4919909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 8321358 - 8321279
Alignment:
Q  188 ttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccc 8321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 45699523 - 45699577
Alignment:
Q  210 aaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggt 264  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggt 45699577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 19398921 - 19398836
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||| ||||||||| | |||||| | |||||||||||   |||||||||||||||||||||||||||||||  |||||||||||||    
T  19398921 ttagacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccc 19398836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 19397544 - 19397610
Alignment:
Q  201 tggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||| |||||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||    
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccc 19397610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 45699568 - 45699609
Alignment:
Q  226 acattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  45699568 acattttggttccataaattgtaaaactcacattttagtccc 45699609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 8320774 - 8320833
Alignment:
Q  179 aaattaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtccc 238  Q
    ||||||||||||||||||| |||||||| |||| |||||    |||||||||||||||||    
T  8320774 aaattaggcttaattggacttttggtcccctaagtaatttcttgtttacattttggtccc 8320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 34147131 - 34147216
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||| || ||||||||||   |||||||| |  |||| |||||||||||||||| |  |||||||||  ||||||||||    
T  34147131 ttaggcttaataggtcatttggtccctcaaataattttcagttttcattttggtcccataagtaataaaactcatgttttggtccc 34147216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 34513681 - 34513601
Alignment:
Q  175 atttaaattaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactca 255  Q
    |||||||||||||||||| || |||||||||| |||| ||||||    ||| ||||||||| |||||| |  |||||||||    
T  34513681 atttaaattaggcttaataggtcatttggtcccctaattaattaccaattttcattttggttccataattaataaaactca 34513601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 26496430 - 26496346
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26496430 ttaggcttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcc 26496346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 8363510 - 8363425
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  8363510 ttaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 8363425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 56157617 - 56157532
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  56157617 ttaggcttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccc 56157532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 36243514 - 36243601
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  36243514 ttagacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtcccct 36243601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 56156933 - 56157013
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtc 265  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  56156933 ggcttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtc 56157013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 52137422 - 52137505
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  52137422 taggcttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcc 52137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 36244888 - 36244801
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||||||||||||| ||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  36244888 ttaggcttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtcccct 36244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 26495118 - 26495204
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||| | ||||||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  26495118 taggcttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtcccct 26495204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 20625623 - 20625554
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaact 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  20625623 aggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 20625554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 20620137 - 20620209
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcaca 257  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  20620137 ggcttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 20620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 52138912 - 52138832
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||| || |||||||||||| || | |||||||||||    
T  52138912 ggcttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaagac-cccattttggtcc 52138832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 1521315 - 1521230
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||||||| ||||||||||||| |||||    |||| ||||||| |||||||| | ||||||   |||||||||||||    
T  1521315 ttaggcttaattggacttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccc 1521230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 1519809 - 1519875
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||| |||||||| |||| |||||   ||||| |||||||||||||||| | ||||||    
T  1519809 ggcttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaa 1519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 669721 - 669681
Alignment:
Q  227 cattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||||||| |  |||||||||||||||||||||    
T  669721 cattttggtcccataattaataaaactcacattttggtccc 669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 13620916 - 13620999
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13620916 taggcttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcc 13620999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 49379698 - 49379775
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacatttt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49379698 aggcttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacatttt 49379775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 13622076 - 13621992
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  13622076 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtcccct 13621992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 49381073 - 49380988
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  49381073 aggcttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtaccct 49380988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 14744079 - 14744140
Alignment:
Q  203 gtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggt 264  Q
    |||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||    
T  14744079 gtcctctaaataattcgcggtttacattttggtctcataaattgtaaaactcacattttggt 14744140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 38538 - 38622
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcccct 269  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  38538 ggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtcccct 38622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 9855000 - 9854916
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  9855000 ttaggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcc 9854916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 9853563 - 9853645
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtc 265  Q
    |||||||||||| ||||| | |||| |||||||||||  ||||| |||||||||||||||||||||||||| | |||||||||    
T  9853563 taggcttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtc 9853645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Original strand, 42793720 - 42793779
Alignment:
Q  208 ctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||   ||||| |||||||||||||||||||||||| | |||||||||||||    
T  42793720 ctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccc 42793779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 28291293 - 28291359
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||  |||||||| |||| |||||||  |||| |||||||||||||||| | ||||||    
T  28291293 ggcttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaa 28291359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 28291483 - 28291401
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||  ||| |||| ||||||||||||  |||| || ||||||||||||| | |||||| | |||||| ||||||    
T  28291483 ggcttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccc 28291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 38697178 - 38697236
Alignment:
Q  209 taaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||   |||||||||||||| |||||||| ||||||  |||||||||||||    
T  38697178 taaataattatcaatttacattttggtctcataaattataaaaccaacattttggtccc 38697236  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 38697864 - 38697948
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||  | |||||||| |||| ||||| |   ||||||||||||| |||||| ||||||||   |||||||||||||    
T  38697864 taggcttaattgatcttttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccc 38697948  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 11796566 - 11796649
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11796566 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccc 11796649  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 23325910 - 23325982
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcaca 257  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  23325910 ggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 23325982  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 23334087 - 23334017
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaact 253  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  23334087 taggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 23334017  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 11797653 - 11797569
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| | ||||||   |||||||||||||    
T  11797653 taggcttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccc 11797569  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 10735758 - 10735827
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    |||||||||||||||| |||||||| |||| ||||||   |||| |||||||||||||||| | ||||||    
T  10735758 ttaggcttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaa 10735827  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 35081557 - 35081489
Alignment:
Q  183 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaa 251  Q
    ||||||||||||||| |||||||| |||| ||||| |  |||| |||||||||||||||| | ||||||    
T  35081557 taggcttaattggacttttggtcccctaagtaattgtttgttttcattttggtcccataactcgtaaaa 35081489  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 4127372 - 4127290
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    ||||||||||||||  |||||||||||| |||||    |||| |||||||||||||||| | |||||| | || |||||||||    
T  4127372 aggcttaattggacccttggtcctctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtcc 4127290  T

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Target: scaffold0219 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 6890 - 6972
Alignment:
Q  182 ttaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggt 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  6890 ttaggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggt 6972  T

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Target: scaffold0219; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 8309 - 8226
Alignment:
Q  184 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    ||||||||||| || |||||||| |||| ||||| |  ||||||||||||||||||||| | ||||||   |||||||||||||    
T  8309 aggcttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccc 8226  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 11722784 - 11722865
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcc 266  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  11722784 ggcttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcc 11722865  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 21777570 - 21777530
Alignment:
Q  217 tatgcgtttacattttggtcccataaattgtaaaactcaca 257  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcaca 21777530  T

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Target: scaffold2071 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 799 - 717
Alignment:
Q  185 ggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtccc 267  Q
    |||||||| || ||||||||||||||| |||||    |||| |||||||||||||||| |  |||||||||  ||||||||||    
T  799 ggcttaataggtcatttggtcctctaattaatttccagttttcattttggtcccataactaataaaactcatgttttggtccc 717  T

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