View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10881_high_23 (Length: 229)
Name: NF10881_high_23
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_high_23 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 36745572 - 36745350
Alignment:
| Q |
7 |
taaactgcagacgacatctcaacagcgtacggtcctggcaaaaatgcttgctctataatgccacctccactgatcaatgaaccccgagcaagtgcattga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36745572 |
taaactgcagacgacatctcaacagcgtacggtcctggcaaaaatgcttgctctataatgccacctccactgatcaatgaactccgagcaagtgcattga |
36745473 |
T |
|
| Q |
107 |
tattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaatcacgca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36745472 |
tattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacacctatttgtagctatgatgaatggctcaatcacgca |
36745373 |
T |
|
| Q |
207 |
atgggtattcaaccagtgactca |
229 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
36745372 |
atgtgtattcaaccagtgactca |
36745350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6274156 - 6274261
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| || || ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
6274156 |
gcaagtgcattaatgttcattgtgtcacgatagtgcggaagtaaaagcttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatg |
6274255 |
T |
|
| Q |
194 |
gctcaa |
199 |
Q |
| |
|
|||||| |
|
|
| T |
6274256 |
gctcaa |
6274261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6288406 - 6288511
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| || || ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
6288406 |
gcaagtgcattaatgttcattgtgtcacgatagtgcggaagtaaaagcttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatg |
6288505 |
T |
|
| Q |
194 |
gctcaa |
199 |
Q |
| |
|
|||||| |
|
|
| T |
6288506 |
gctcaa |
6288511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6331535 - 6331640
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || || || |||| || |||||||| ||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
6331535 |
gcaagtgcattaatgttcattgtgtcacgataatgtggaagtagaagtttgtgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatg |
6331634 |
T |
|
| Q |
194 |
gctcaa |
199 |
Q |
| |
|
|||||| |
|
|
| T |
6331635 |
gctcaa |
6331640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6351894 - 6351999
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| || ||| ||||||||||| ||||||||||| ||| || ||||| ||||||||||||| |
|
|
| T |
6351894 |
gcaagtgcatttatgttcattgtgtcacggtagtgaggaagtaaaagtttatgaatagggtgaaccacactaagatgcctgtttgttgctatgatgaatg |
6351993 |
T |
|
| Q |
194 |
gctcaa |
199 |
Q |
| |
|
|||||| |
|
|
| T |
6351994 |
gctcaa |
6351999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 6390630 - 6390729
Alignment:
| Q |
100 |
gcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa |
199 |
Q |
| |
|
||||| || |||||||||| ||||||||| || || ||| ||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
6390630 |
gcatttatgttcattgtgttacgatagtgtggaagtaaaagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa |
6390729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 7458732 - 7458822
Alignment:
| Q |
109 |
ttcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa |
199 |
Q |
| |
|
|||||||||||||| ||||| || || ||| ||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
7458732 |
ttcattgtgtcacggtagtgtggaagtaaaagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa |
7458822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 6321028 - 6321133
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || || | |||| || |||||||| ||||||||||| ||| ||||| || ||||||||||||| |
|
|
| T |
6321028 |
gcaagtgcattaatgttcattgtgtcacgataatgtggaagcagaagtttgtgaatagggtgaaccacactaagatgcctattagttgctatgatgaatg |
6321127 |
T |
|
| Q |
194 |
gctcaa |
199 |
Q |
| |
|
|||||| |
|
|
| T |
6321128 |
gctcaa |
6321133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 6409835 - 6409934
Alignment:
| Q |
100 |
gcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa |
199 |
Q |
| |
|
||||| || |||||||||| ||||||||| || || || ||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
6409835 |
gcatttatgttcattgtgttacgatagtgtggaagtaatagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa |
6409934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 6362830 - 6362932
Alignment:
| Q |
97 |
agtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggct |
196 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || || | |||| ||||||||||| ||||||||||| ||| |||||||| ||||||| |||||||| |
|
|
| T |
6362830 |
agtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaaccacacttagatgcctatttgttgctatgacgaatggct |
6362929 |
T |
|
| Q |
197 |
caa |
199 |
Q |
| |
|
||| |
|
|
| T |
6362930 |
caa |
6362932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 6456660 - 6456745
Alignment:
| Q |
37 |
ggtcctggcaaaaatgcttgctctataatgccacctccactgatcaatgaaccccgagcaagtgcattgatattcattgtgtcacg |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || |||| | || ||||||||| |||||||||| ||||||||||| |
|
|
| T |
6456660 |
ggtcctggcaaaaatgtttgctctataatgccaccagcattgattagagattgtcgagcaagtccattgatatttattgtgtcacg |
6456745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 7471134 - 7471224
Alignment:
| Q |
109 |
ttcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa |
199 |
Q |
| |
|
||||||||||||| ||||| || || ||| ||||||||| | ||||||||||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
7471134 |
ttcattgtgtcacagtagtgtggaagtaaaagtttatgaatatggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa |
7471224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 36925758 - 36925655
Alignment:
| Q |
94 |
gcaagtgcattgatattcattgtgtcacgatagtgaggctgtggaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg |
193 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| ||||||| ||| |||||||||||||| |||| ||||| |||| ||||||| |||||||||||||| |
|
|
| T |
36925758 |
gcaagtccatttatattcatggtgtcacgaaagtgaggatgtaatagcttatgaatagggtgaagtacactaagacgcctatttgaagctatgatgaatg |
36925659 |
T |
|
| Q |
194 |
gctc |
197 |
Q |
| |
|
|||| |
|
|
| T |
36925658 |
gctc |
36925655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University