View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_high_3 (Length: 424)
Name: NF10881_high_3
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 38744763 - 38744367
Alignment:
| Q |
1 |
tgaaactttggctccattttgaacctgttattgtaatacactttcaacatcctaactcatatcaataggttacaccttctttcnnnnnnngatgaaaaag |
100 |
Q |
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| T |
38744763 |
tgaaactttggttccattttgaacctgttattgtaatacactttcaacatcctaactcatatcaataggttacacctt---tctttttttgatgaaaaag |
38744667 |
T |
|
| Q |
101 |
gttaaaccttcaaacagagtgtaacaaccgctaaaaaagtgattggcaatgatatgaaatgtcacaatttgccggttttgttttaccgatcacaatcatc |
200 |
Q |
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| T |
38744666 |
gttaaaccttcaaaaagagtgtaacaaccgctaaaaaagtgattggcaatgatatgaaatgtcacaatttgccgcttttgttttaccgaacacaatcatc |
38744567 |
T |
|
| Q |
201 |
atgtcagacacatcctgccgcaaattacatccctcaagttgctctatcatatatgcctttttcttaataaaataacatgtgttgaaataatacttttaat |
300 |
Q |
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| T |
38744566 |
atgtcagacacatcctgccgcaaattacatccctcaagttgctctatcatatatgcctttttcttaataaaataacatgtgttaaaataatacttttaat |
38744467 |
T |
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| Q |
301 |
taattcctttaatatctgcaatcttcatatatctgcaggctaccagaattattatatacaataataaaatgttcaagtggcatatagataatgccacaaa |
400 |
Q |
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| T |
38744466 |
taattcctttaatatc-----------------tgcaggcttccagaattattatatacaataataaaatgttcaagtggcatatagataatgccacaaa |
38744384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 371
Target Start/End: Complemental strand, 38740622 - 38740531
Alignment:
| Q |
282 |
ttgaaataatacttttaattaattcctttaatatctgcaa--tcttcatatatctgcaggctaccagaattattatatacaataataaaatg |
371 |
Q |
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||||| |||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| ||| || |||||||||||||| |
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| T |
38740622 |
ttgaagtaatacttttaattaattcctttagtatctctaaaatcttcatatatttgcaggcttccagaatcattttacacaataataaaatg |
38740531 |
T |
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