View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_high_5 (Length: 369)
Name: NF10881_high_5
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 5573990 - 5573652
Alignment:
| Q |
18 |
aatagttgtggcacccttaatttgactaaggcgagtttcttagtttata---taattttatgttttagtttattgcttcaatatgaagaaattagttttt |
114 |
Q |
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| T |
5573990 |
aatagttgtggcacccttaatttgactaaggcgagtttcttagtttatagtataattttatgttttagtttattgcttcaatatgaagaaattagttttt |
5573891 |
T |
|
| Q |
115 |
atagttcgttggcatgccacacatgatactttgtagtgtgtagagtaaattagcttttaataatgtaa---cttgcaaaaaaccaatattttcnnnnnnn |
211 |
Q |
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| T |
5573890 |
atagttcgatggcatgccacacatgatactttgtagtgtgtagagtaaattagcttttaataatgtaataacttgcaaaaaaccaatattttctttttta |
5573791 |
T |
|
| Q |
212 |
aaattgagtggtcccatcattaatatttatgtcttcaacttgtttgttcttcgtttgttccttaattatcatctggattatgtagcttcattagactttc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5573790 |
aaattgagtggtcccatcattaatatttatgtcttcaacttgtttgttcttggttggttccttaattatcatctggattctgtagcttcattagactttc |
5573691 |
T |
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| Q |
312 |
ttcttagagatggaatctataatcaaaacatggttggtg |
350 |
Q |
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| T |
5573690 |
ttcttagagatggaatctataatcaaaacatggttggtg |
5573652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 5583022 - 5582912
Alignment:
| Q |
255 |
ttgttcttcgtttgttccttaattatcatctggattatgtagcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtgttac |
354 |
Q |
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| T |
5583022 |
ttgttcttggttggttccttaattattatctggatttattagcttcattagattttcttcttagagatggattctataataaagacatggttggtgtttc |
5582923 |
T |
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| Q |
355 |
ctatgcttctc |
365 |
Q |
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|||| |||||| |
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| T |
5582922 |
ctattcttctc |
5582912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 5583204 - 5583107
Alignment:
| Q |
23 |
ttgtggcacccttaatttgactaaggcgagtttcttagtttatataattttatgttttagtttattgcttcaatatgaagaaattagtttttatagtt |
120 |
Q |
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||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |||| ||||| |||||| |||||||||||| |||||||||| |
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| T |
5583204 |
ttgtggcacccttaatttgacaaaggtgattttcttagtttatcaaattttatgatttaagttattaattcaatttgaagaaattagcttttatagtt |
5583107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 12051652 - 12051707
Alignment:
| Q |
295 |
agcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtg |
350 |
Q |
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| T |
12051652 |
agcttcattagattttcttcttagagacggaatctatgatcaagacatggttggtg |
12051707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 12064535 - 12064591
Alignment:
| Q |
294 |
tagcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtg |
350 |
Q |
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||||||||||| | |||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
12064535 |
tagcttcattatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12064591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 5593461 - 5593404
Alignment:
| Q |
308 |
tttcttcttagagatggaatctataatcaaaacatggttggtgttacctatgcttctc |
365 |
Q |
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|||||||||||||||||||||||| || || ||||||||||||| ||||| |||||| |
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| T |
5593461 |
tttcttcttagagatggaatctatgataaagccatggttggtgtttcctattcttctc |
5593404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 12059087 - 12059139
Alignment:
| Q |
298 |
ttcattagactttcttcttagagatggaatctataatcaaaacatggttggtg |
350 |
Q |
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||||||| | |||||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
12059087 |
ttcattatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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