View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_high_6 (Length: 357)
Name: NF10881_high_6
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 54304068 - 54303724
Alignment:
| Q |
4 |
tttttcggcagcaagacgttccatttctctccacatataattagatgcccgaaatttacctcctgaactgtcaattcggacaataacagccttgaattct |
103 |
Q |
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| T |
54304068 |
tttttcggcagcaagacgtttcatttctctccacatataattagatgccctaaatttacctcctgaactgtcaattcggacaataacaaccttgaattct |
54303969 |
T |
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| Q |
104 |
gttgatcctctgaccctatatatattctcaacaaactccattgtactagtgatagaccctgcgtctcgaatgatggctattagttctttagcccttgata |
203 |
Q |
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| T |
54303968 |
gttgatgctctgaccctatatatattctcaacaaactccgttgtactagtgatagaccctgcgtctcgaatgatggctattagttctttagcccttgata |
54303869 |
T |
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| Q |
204 |
ttaatccaacagtcgatttactaacgcgagagtattctttgaaagaaacaaaaggcagtgacttcaccccaagcctatccttcaagttggtgataacatc |
303 |
Q |
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| T |
54303868 |
ttaatccaacagtcgatttactaacgcgagagtattctttgaaagaaacaaaaggcagtgatttcaccccaagcctttccttcaagttggtgataacatc |
54303769 |
T |
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| Q |
304 |
atccttatatagtaagtccgttgtgaaaccctcttctttgagttc |
348 |
Q |
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| T |
54303768 |
atccttatatagtaagtccgttatgaaaccctcttctttgagttc |
54303724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 56209139 - 56209217
Alignment:
| Q |
158 |
gaccctgcgtctcgaatgatggctattagttctttagcccttgatattaatccaacagtcgatttactaacgcgagagtatt |
239 |
Q |
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| T |
56209139 |
gaccctgaggctcgaatgatggctattagttctttaccctttgatat---tccaacagtccattttctaattcgagagtatt |
56209217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 45879156 - 45879196
Alignment:
| Q |
61 |
acctcctgaactgtcaattcggacaataacagccttgaatt |
101 |
Q |
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| T |
45879156 |
acctcctggactgtcaattcggataatagcagccttgaatt |
45879196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 56209033 - 56209073
Alignment:
| Q |
61 |
acctcctgaactgtcaattcggacaataacagccttgaatt |
101 |
Q |
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| T |
56209033 |
acctcctggactgttaattcggataataacagccttgaatt |
56209073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 10520954 - 10520907
Alignment:
| Q |
61 |
acctcctgaactgtcaattcggacaataacagccttgaattctgttga |
108 |
Q |
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| T |
10520954 |
acctcctgtactgtcaattcggataataacagccttgatttcttttga |
10520907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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