View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10881_low_11 (Length: 294)

Name: NF10881_low_11
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10881_low_11
NF10881_low_11
[»] chr7 (12 HSPs)
chr7 (17-277)||(21787197-21787472)
chr7 (22-86)||(21746565-21746629)
chr7 (114-275)||(21995031-21995202)
chr7 (198-277)||(21667101-21667180)
chr7 (199-271)||(21789961-21790033)
chr7 (198-277)||(21658245-21658324)
chr7 (196-277)||(21630562-21630643)
chr7 (22-95)||(21803348-21803420)
chr7 (198-275)||(21706088-21706165)
chr7 (213-270)||(21746435-21746491)
chr7 (198-275)||(21765714-21765791)
chr7 (60-97)||(21794112-21794149)
[»] scaffold0182 (1 HSPs)
scaffold0182 (203-275)||(27058-27130)


Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 21787472 - 21787197
Alignment:
Q  17 cacagaaaaggcactctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaactaaaaaattcaacaaaatc--cagagaagt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| | ||||  |||||||||    
T  21787472 cacagaaaaggcactctttatttctgagatactcatagtcaagactcatgaagggacacaccaacttaacgcaaaaattcaaaacaatccacagagaagt 21787373  T
Q  115 gaagtacactacttgccttaccagaaggcaattattatgcgtggtgcattaccaactcaaac-------------gttacgaaattttattcgtatgaaa 201  Q
     |||||||||||||||||||||||||| ||||||||||||  |||||| ||||||| || ||             |||||||| ||||| | ||||||||    
T  21787372 aaagtacactacttgccttaccagaagacaattattatgcacggtgcaataccaacacatactcgacctatttttgttacgaatttttaattgtatgaaa 21787273  T
Q  202 gcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaac 277  Q
    |||||||||| ||||||||||||||||||  || |||||| ||||  | ||||||||| |||||||||||||||||    
T  21787272 gcaacattgccataacgaaccacctttatttgctagccgggttaaccgtaaaccatgtttgaatgaaagtaagaac 21787197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 21746629 - 21746565
Alignment:
Q  22 aaaaggcactctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaac 86  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  21746629 aaaagacactctttatttttgaaatactcatagtcaagactcaagaagggacacacaaacttaac 21746565  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 275
Target Start/End: Complemental strand, 21995202 - 21995031
Alignment:
Q  114 tgaagtacactacttgccttaccagaaggcaattattatgcgtggtgcattaccaactcaa---ac--------gttacgaaattttattcgtatgaaag 202  Q
    |||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||| ||    ||        |||||||||||||| || || |||||    
T  21995202 tgaagtacac-acttgccttaccagaagacaattattatgtgtggtgtattaccaacacacttgacctatttttgttacgaaattttaatcttaagaaag 21995104  T
Q  203 caacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 275  Q
    ||||||||| ||||| ||||||||||||   | |||||| | || || ||||||||||||||| |||||||||    
T  21995103 caacattgccataacaaaccacctttatttactagccggttgaactgtaaaccatgtctgaattaaagtaaga 21995031  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 21667180 - 21667101
Alignment:
Q  198 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaac 277  Q
    |||| ||||||||  ||||||| |||||||||| |||||||||| | ||| | |||||||||||||||||||||||||||    
T  21667180 gaaaacaacattgtcataacgagccacctttattagcaagccgggtgaatcgtaaaccatgtctgaatgaaagtaagaac 21667101  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 21790033 - 21789961
Alignment:
Q  199 aaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagt 271  Q
    ||||||||||||| ||||| |||||||||||  |||||||||| | ||  ||||||||||| |||||||||||    
T  21790033 aaagcaacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagt 21789961  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 21658324 - 21658245
Alignment:
Q  198 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaac 277  Q
    |||| ||||||||  |||||||| ||| |||||  || |||||| | ||||| |||||||||||||||||||||||||||    
T  21658324 gaaaacaacattgtcataacgaatcacatttatttgctagccggttgaattgtaaaccatgtctgaatgaaagtaagaac 21658245  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 21630643 - 21630562
Alignment:
Q  196 atgaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaagaac 277  Q
    |||||| ||||||||  |||||||| ||| |||||  || || ||| | ||||| |||||||||||||||||||||||||||    
T  21630643 atgaaaacaacattgtcataacgaatcacttttatttgctagtcgggtgaattgtaaaccatgtctgaatgaaagtaagaac 21630562  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 21803348 - 21803420
Alignment:
Q  22 aaaaggcactctttatttctgagatactcatagtcaagactcaagaagggacacaccaacttaactaaaaaatt 95  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||| |||||| | ||||||||  |||||||    
T  21803348 aaaaggctcactttatttttgaaatactcatagtcaagactcaagaa-ggacactcaaacttaacccaaaaatt 21803420  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 21706165 - 21706088
Alignment:
Q  198 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 275  Q
    |||| ||||||||  |||||||| |||||||||  |  |||||| | || || |||||||||||||||||||||||||    
T  21706165 gaaaacaacattgtcataacgaagcacctttatttgttagccgggtgaactgtaaaccatgtctgaatgaaagtaaga 21706088  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 21746491 - 21746435
Alignment:
Q  213 ataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaag 270  Q
    ||||| ||||||||||||  || |||||| | ||||||||||||||||||||||||||    
T  21746491 ataactaaccacctttatt-gctagccgggtgaattgcaaaccatgtctgaatgaaag 21746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 21765791 - 21765714
Alignment:
Q  198 gaaagcaacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 275  Q
    |||| ||||||||  ||||||||||||| ||||  || |||||| | ||  | |||||||||||||||||||||||||    
T  21765791 gaaaacaacattgtcataacgaaccaccattatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaaga 21765714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 21794149 - 21794112
Alignment:
Q  60 actcaagaagggacacaccaacttaactaaaaaattca 97  Q
    |||||||||||||||||||||||||||  |||||||||    
T  21794149 actcaagaagggacacaccaacttaacccaaaaattca 21794112  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 27130 - 27058
Alignment:
Q  203 caacattgctataacgaaccacctttatcagcaagccggattaattgcaaaccatgtctgaatgaaagtaaga 275  Q
    ||||||||  ||||||||| ||||||||  || |||||| | ||  | |||||||||||||||||||||||||    
T  27130 caacattgtcataacgaacaacctttatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaaga 27058  T

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