View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_12 (Length: 282)
Name: NF10881_low_12
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 35355407 - 35355127
Alignment:
| Q |
1 |
aatggccatattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagtta |
100 |
Q |
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| T |
35355407 |
aatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagtta |
35355308 |
T |
|
| Q |
101 |
aatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355307 |
aatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtc |
35355208 |
T |
|
| Q |
201 |
atacattggcatgaaaagtgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgtggaaatatatcacgga |
281 |
Q |
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| T |
35355207 |
atacattggcatgaaaagtgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgtggaaatatatcacgga |
35355127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 35381418 - 35381145
Alignment:
| Q |
4 |
ggccatattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagttaaat |
103 |
Q |
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| T |
35381418 |
ggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatggaactaagtgtagttaaat |
35381319 |
T |
|
| Q |
104 |
gtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtcata |
203 |
Q |
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| T |
35381318 |
gtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggcttcatatgtagcatctgtggatttatctacggtgccataaatgtagtcata |
35381219 |
T |
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| Q |
204 |
cattggcatgaaaagtgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgtggaaatatatca |
277 |
Q |
| |
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|| |||||||| |||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35381218 |
tataggcatgaagagtgagtaattagacctaaatttggtgtgatgcaatgagtgaaacctgtggaaatatatca |
35381145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 35370851 - 35370585
Alignment:
| Q |
4 |
ggccatattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagttaaat |
103 |
Q |
| |
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||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||| | |||||| || |||| || ||| ||||||| |
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| T |
35370851 |
ggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaatgttgttaaat |
35370752 |
T |
|
| Q |
104 |
gtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtcata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||| |
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| T |
35370751 |
gtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaatgtagtcata |
35370652 |
T |
|
| Q |
204 |
cattggcatgaaaagtgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgtggaaa |
270 |
Q |
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| T |
35370651 |
cattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacctatggaaa |
35370585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 19629270 - 19629516
Alignment:
| Q |
19 |
agataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagttaaatgtgttaagtggacca |
118 |
Q |
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|||||||||||||| |||||||| ||||| |||||||||||||| ||||| || | |||| | || ||||||||||| ||||||||||||||||| |||| |
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| T |
19629270 |
agataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaagatagaatcaagtgttgttaaatgtgttaagtgcacca |
19629369 |
T |
|
| Q |
119 |
catctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtcatacattggcatgaaaag |
218 |
Q |
| |
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|||||||||| |||| | ||||| |||| | | |||||||||||||||||||||| || |||||||||||||||||||||||| || |||||||| || |
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| T |
19629370 |
catctggtgattcctcttgtctcttcaaacaagattcatatgtagcatctgtggatgcatccactgtaccataaatgtagtcatatataggcatgaagag |
19629469 |
T |
|
| Q |
219 |
tgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgt |
265 |
Q |
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| T |
19629470 |
tgagtaatttgacctaaattttgtgtgatgcagcgaatgaaacctgt |
19629516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 19685381 - 19685135
Alignment:
| Q |
19 |
agataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataaattgaatcaagtgtagttaaatgtgttaagtggacca |
118 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||| |||||||| | |||| | || ||||||||||| ||||||||||||||||| |||| |
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| T |
19685381 |
agataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaagatggaatcaagtgttgttaaatgtgttaagtgcacca |
19685282 |
T |
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| Q |
119 |
catctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgcactgtaccataaatgtagtcatacattggcatgaaaag |
218 |
Q |
| |
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||||||||||||||| | ||||| || | | | ||||||||||||||||| |||| ||| ||| ||||||||||||| |||||| || |||||||| || |
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| T |
19685281 |
catctggtgactcctcttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacagtaccataaatgtggtcatatataggcatgaagag |
19685182 |
T |
|
| Q |
219 |
tgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgt |
265 |
Q |
| |
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|||||| || | ||| ||||| ||||||||||| ||||||||||||| |
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| T |
19685181 |
tgagtaatttgacctaaattttgtgtgatgcagcgagtgaaacctgt |
19685135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 2275367 - 2275407
Alignment:
| Q |
187 |
ccataaatgtagtcatacattggcatgaaaagtgagtagtt |
227 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||| |
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|
| T |
2275367 |
ccataaatgtagtcataaagtggcatgaagagtgagtagtt |
2275407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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