View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_15 (Length: 265)
Name: NF10881_low_15
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 30133510 - 30133743
Alignment:
| Q |
16 |
cacagacactaacacgtagacactgacaatcaattaaatataattacatgtgtcgatgtaatgtcggggtacaacaccaacacatcttcgatcaataatg |
115 |
Q |
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| T |
30133510 |
cacaaacattaacacgtagactccgacaaataattaaatataattacatgtgtcgatataatgtcggggtacaacaccgacacatcttcgatcaataatg |
30133609 |
T |
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| Q |
116 |
ccggtgctacacaaacaaaaccatagaaagatacaacaaatggagcaaagtttgccttgcttgcaggacaaggcatgagaaaaga-taatctacatcaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30133610 |
ccggtgctacacaaacaaaaccatagaaagatacaacaaatggagcaaagtttggcttgcttgcaggacaaggcatgagaaaagattaatctacatcaaa |
30133709 |
T |
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| Q |
215 |
gtctggtcggtagg--gcatgtgaacaaagacac |
246 |
Q |
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|||||||||||||| |||||||||| ||||||| |
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| T |
30133710 |
gtctggtcggtagggcgcatgtgaacgaagacac |
30133743 |
T |
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