View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_16 (Length: 257)
Name: NF10881_low_16
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 12651165 - 12651039
Alignment:
| Q |
116 |
ctctgacaaaatgaatcagcttttattaccaattaattgcttttattctggtacaaagtcaacatctactccattaaagcctatttttcatattttaatt |
215 |
Q |
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| T |
12651165 |
ctctgacaaaatgaatcagcttttattaccaattaattgcttttattctggtacaaagtcaacatctactccattaaagcctatttttcatattttaatt |
12651066 |
T |
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| Q |
216 |
cttcccatgattctctgctgaaatatg |
242 |
Q |
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| T |
12651065 |
tttcccatgattctctcctgaaatatg |
12651039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 12651270 - 12651202
Alignment:
| Q |
11 |
cagagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaactgttga |
79 |
Q |
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| T |
12651270 |
cagagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaactgttga |
12651202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 12646135 - 12646075
Alignment:
| Q |
13 |
gagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaac |
73 |
Q |
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| T |
12646135 |
gagaaaagcacagaagtgagatatattacactgcttgttgggttgagtcaaagttgcaaac |
12646075 |
T |
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