View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10881_low_17 (Length: 252)
Name: NF10881_low_17
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 3455394 - 3455152
Alignment:
| Q |
10 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaatttcagtgttacaattaatttgat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3455394 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattttagtgttacaattaatttgat |
3455295 |
T |
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| Q |
110 |
ttgaaatcaagaagcttactattgttttcttgatcccttgt---aatagaggagacaatgagagcaaaacaaatgctggcaacgatgtctcatgagataa |
206 |
Q |
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| T |
3455294 |
ttgatatcaagaagcttattattgttttcttgatcccttgtaataatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataa |
3455195 |
T |
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| Q |
207 |
gatcgccactttctggtgttgttagcatggctgaaattcttac |
249 |
Q |
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| T |
3455194 |
gatcaccgctttctggtgttgttagcatggctgaaattcttac |
3455152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 3479759 - 3479514
Alignment:
| Q |
10 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaatttcagtgttacaattaatttgat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
3479759 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattttagtgttacaatgaatttgat |
3479660 |
T |
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| Q |
110 |
ttgaaatcaagaagcttactattgttttcttgatcccttgt---aatagaggagacaatgagagcaaaacaaatgctggcaacgatgtctcatgagataa |
206 |
Q |
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| T |
3479659 |
ttgatatcaagaagcttattattgttttcttgatcccttgtaataatagaggagacaatgagagcaaaacaaatgttggcaacaatgtctcatgagataa |
3479560 |
T |
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| Q |
207 |
gatcgccactttctggtgttgttagcatggctgaaattcttactac |
252 |
Q |
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| T |
3479559 |
gatcaccactttctgatgttgttagcatggccaaaattcttactac |
3479514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 48695152 - 48695249
Alignment:
| Q |
150 |
taatagaggagacaatgagagcaaaacaaatgctggcaacgatgtctcatgagataagatcgccactttctggtgttgttagcatggctgaaattctt |
247 |
Q |
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|||||||||| || ||||||||||| ||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48695152 |
taatagaggaaactatgagagcaaagcaagtgctggcaacaatgtcacatgagataagatctccactttctggtgttgttagcatggctgaaattctt |
48695249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 48695019 - 48695063
Alignment:
| Q |
10 |
aagcaaaggaaacagaacttaataaaaccattcacattacaggtt |
54 |
Q |
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| T |
48695019 |
aagcaaaggaaacagaactgaataaaaccattcacattacaggtt |
48695063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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