View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10881_low_18 (Length: 251)
Name: NF10881_low_18
Description: NF10881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10881_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26528110 - 26527872
Alignment:
| Q |
1 |
taagagatctaaactcctcttaaataagatctaaccgatttgagttggtttgatatcgtagacgtgaaaccttatagcgtatttttccttaaaatctcat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
26528110 |
taagagatttaaactcctcttaaataagatctaactgatttgaattggtttgatatcgtagacatgaaaccttgtagcatgtttttccttaaaatctcat |
26528011 |
T |
|
| Q |
101 |
attcgattatcctcaatattaatttgaatgagctagtatagcttcctcaaaaaataagtggttacaagttcgatctttgatttttaagtatgaaaaacat |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26528010 |
attcgattatcctcaatatcaatttgaatgagctagtatagcttcttcaaaaaataagtggttacaagttcgatctttgatttttaagtatgaaaaagat |
26527911 |
T |
|
| Q |
201 |
ttgattggaaaaatgagaactcgctttgtgtgtttccta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26527910 |
ttgattggaaaaatgagaactcgctttgtgtgtttccta |
26527872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 21029654 - 21029602
Alignment:
| Q |
102 |
ttcgattatcctcaatattaatttgaatgagctagtatagcttcctcaaaaaa |
154 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
21029654 |
ttcgattctccccaatactaatttgaatgagctagtttagcttcttcaaaaaa |
21029602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 32654245 - 32654293
Alignment:
| Q |
77 |
gcgtatttttccttaaaatctcatattcgattatcctcaatattaattt |
125 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
32654245 |
gcgtatttttcgtcaaaatctcatattcgattatcttcagtatcaattt |
32654293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University